View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_53 (Length: 261)
Name: NF1858_low_53
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 33251385 - 33251129
Alignment:
| Q |
1 |
agttaattatagttgctttctttttgggaatttgcattgttattcaaatttgaatgtgaggtgctgattgtgaatttcaatgcatgcagcaatggcatcc |
100 |
Q |
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| T |
33251385 |
agttaattatagttgctttctttttgggaatttgcattgttattcaaatttgaatgtgaggtgctgattgtgaatttcaatgcatgcagcaatggcatcc |
33251286 |
T |
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| Q |
101 |
agataggtggacaagaacaccttctttacttagcgaagccaagtgtaaatttcagaacattcaagaagcttattcaggtat-----------tatatggt |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33251285 |
agataggtggacaagaacaccttctttacttagcgaagccaagtgtaaatttcagaacattcaagaagcttattcaggtatatatatatatatatatggt |
33251186 |
T |
|
| Q |
190 |
tcaagcattttaagacttgtgaatttttgtttcttttgggagaaattatgttattga |
246 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33251185 |
tcaagcatttcaagacttgtgaatttttgtttcttttgggagaaataatgttattga |
33251129 |
T |
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