View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1858_low_56 (Length: 259)
Name: NF1858_low_56
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_56 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 5943601 - 5943362
Alignment:
| Q |
20 |
gttgggtcttattttgcatttaaatcagtttccggtatacagtagaatcttatagagggttcatctttctcatgacccatgcacgtacagattccattgc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5943601 |
gttgggtcttattttgcatttaaatcagtttccggcatacagtagaatcttatagagggttcatctttctcatgacccatgcacgtacagattccattgc |
5943502 |
T |
|
| Q |
120 |
tttgcatagtcttttggtcacatggaattcagcaaaaagtgaaaaagaaaatagaaggctgccctatagttaagtacctagcaagcaagccacactctag |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5943501 |
tttgcatagtcttttggtcacatggaattcagcaaaaagtgaaaaagaaaatagaaggctgccctgtagttaagtacctagcaagcaagccacactctag |
5943402 |
T |
|
| Q |
220 |
aaagaaagaaaaactgatatatcaacattttttgcttgct |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5943401 |
aaagaaagaaaaactgatatatcaacattttttgcttgct |
5943362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 77 - 225
Target Start/End: Complemental strand, 5978407 - 5978257
Alignment:
| Q |
77 |
ggttcatctttctcatgacccatgcacgtacagattccattgctttgc-atagtcttttggtcacatggaattcagcaaaaagtgaaaaagaaaatagaa |
175 |
Q |
| |
|
||||||||||| | | ||||||| || ||||| |||| |||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5978407 |
ggttcatcttttttacgacccatacatgtacaaattcaattgcttttctactgtcttttggtcacatggaattcagcaaaaagtgaaaaagaaaataaaa |
5978308 |
T |
|
| Q |
176 |
ggctgccctatagtta-agtacctagcaagcaagccacactctagaaagaa |
225 |
Q |
| |
|
|||| ||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
5978307 |
ggctcccctatagttagattacctagcaagcaagccacactctagaaagaa |
5978257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 5914438 - 5914334
Alignment:
| Q |
127 |
agtcttttggtcacatggaattcagcaaaaagtgaaaaagaaaatagaaggctgccctatagttaagtacctagcaagcaagccacactctagaaagaaa |
226 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| || ||||| | | ||||||||||||||||||||||| | |
|
|
| T |
5914438 |
agtcttttagtcacatggaattcagcaaaaggtgaaaaagaaaata-aaggctgccctataattgagtacttggtaagcaagccacactctagaaagata |
5914340 |
T |
|
| Q |
227 |
gaaaaa |
232 |
Q |
| |
|
|||||| |
|
|
| T |
5914339 |
gaaaaa |
5914334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University