View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_58 (Length: 255)
Name: NF1858_low_58
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 31321951 - 31322188
Alignment:
| Q |
3 |
gatgtcgaagaaaatatactatgtacagaggttgataaaataaaaccaatcaaaagcaagtgtttttgctccttccttctcctacttctgaacaccataa |
102 |
Q |
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| T |
31321951 |
gatgtccaagaagatatactatgtacaggggttgataaaataaaaccaatcaaaagcaagtgtttttgctccttccttctcctacttctgaacaccataa |
31322050 |
T |
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| Q |
103 |
ttatcacaagaatacatcttcaacataacacttttcc---taatctccctatcaagcatctcctctatccaaccttgcctcaatttgttccacttattat |
199 |
Q |
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| T |
31322051 |
ttatcacaaaaatacatcttcaacataacacttttccttattatctccctatcaagcatctcctctatccaaccttgcctcaatttgttccacttattgt |
31322150 |
T |
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| Q |
200 |
tctgccataacaacaattgtaggattggtgttacgaat |
237 |
Q |
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| T |
31322151 |
tctgccataacaacaattgtaggattggtgttacgaat |
31322188 |
T |
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Back To:
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 42602474 - 42602544
Alignment:
| Q |
167 |
tccaaccttgcctcaatttgttccacttattattctgccataacaacaattgtaggattggtgttacgaat |
237 |
Q |
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| T |
42602474 |
tccaaccttgcctcattgtgttccgcttcttgctctgccataacaacaattgtaggattggtgctacgaat |
42602544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 42602141 - 42602213
Alignment:
| Q |
55 |
aaagcaagtgtttttgctccttccttctcctacttctgaacaccataattatcacaagaatacatcttcaaca |
127 |
Q |
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| T |
42602141 |
aaagtaagtgctgttgctccttcctgctcctgcttctgaacactgtaattatcacaagaatacattttcaaca |
42602213 |
T |
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