View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_6 (Length: 545)
Name: NF1858_low_6
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 11 - 531
Target Start/End: Complemental strand, 13976224 - 13975698
Alignment:
| Q |
11 |
cagagatggaagtattgggcacaatgaacccaccaaaactacactcatgagaatgagcgatctttacttttttcagtatcttccatagccagccgctctt |
110 |
Q |
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| T |
13976224 |
cagagatggaagtattgggcacaatgaacccaccaaaactacactcatgagaatgagcgatctttacttttttaagtatcttccatagccggccgctctt |
13976125 |
T |
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| Q |
111 |
gcacgagatcaagaacaatgact-attcactatcagttttcgccaaacacatgcaccaatattgtctcaacatcaataggcgaagaggaaagtcatggta |
209 |
Q |
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| T |
13976124 |
gcacgagatcaagaacaatgactcatccactatcagttttagtcgaacacatgcaccaatattgtctcaacatcaataggcgaagaggaaagtcatggtg |
13976025 |
T |
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| Q |
210 |
aaggaatagaagtatcttgttgtttttgcataatttgaatttggtgaagaataccttta----ggttaattcatatgatcatcattggttaagtctttaa |
305 |
Q |
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| T |
13976024 |
aaggaatagaagtatcttgttgtttttgcataatttgaatttggtgaagaatacctttatttaggttaatccatatgatcatcattggttaagtctttaa |
13975925 |
T |
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| Q |
306 |
atggtacaccctttaatttcaactcaa-tatcaactttcaaacaagcaatagaacactattctatcctcttccctagattttattattaatcattgttac |
404 |
Q |
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| T |
13975924 |
atggtacaccctttaatttcaactcaaatatcaactttcaaacaagcaatagaacactattctatcctcttccctagattatattattaatcattgttac |
13975825 |
T |
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| Q |
405 |
tactcgccattgcatttttcttgtgttctagcattgaggatagtttttccatattccctaattgatttccgatggttagtatggttagcatggaggatag |
504 |
Q |
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| T |
13975824 |
tactcgccattgcatttttcttgtgttttagcattgaggatagtttttccatactccctaattgatttccgatggttagtatggttagcatggaggatag |
13975725 |
T |
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| Q |
505 |
tattccccactcttcccaggaaaatgt |
531 |
Q |
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| T |
13975724 |
tattccccactcttccaaggaaaatgt |
13975698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 37925426 - 37925368
Alignment:
| Q |
181 |
atcaataggcgaagaggaaagtcatggtaaaggaatagaagtatcttgttgtttttgca |
239 |
Q |
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| T |
37925426 |
atcaatagacgaagaagaaagccctgttgaaggaatagaagtatcttgttgtttttgca |
37925368 |
T |
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