View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1858_low_64 (Length: 251)

Name: NF1858_low_64
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1858_low_64
NF1858_low_64
[»] chr7 (2 HSPs)
chr7 (9-235)||(12828175-12828400)
chr7 (58-168)||(37607101-37607210)
[»] chr3 (2 HSPs)
chr3 (9-234)||(28570598-28570824)
chr3 (9-234)||(47819053-47819277)
[»] chr1 (4 HSPs)
chr1 (82-177)||(42749867-42749961)
chr1 (73-167)||(4864436-4864529)
chr1 (55-125)||(19470972-19471042)
chr1 (93-125)||(45243547-45243579)
[»] chr4 (1 HSPs)
chr4 (14-125)||(13853243-13853354)
[»] chr6 (1 HSPs)
chr6 (43-125)||(17196282-17196364)
[»] chr2 (2 HSPs)
chr2 (20-125)||(16079256-16079361)
chr2 (20-131)||(21943691-21943802)
[»] chr5 (1 HSPs)
chr5 (55-125)||(40754773-40754843)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 12828400 - 12828175
Alignment:
Q  9 gattattcttctaaattcggtattaaatgcgatacctattttctatttgtctttcttgaagataccggtgaaagtgtggcagagaattgtgagaatccaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12828400 gattattcttctaaattcggtattaaatgcgatacctattttctacttgtctttcttgaagataccggtgaaagtgtggcggagaattgtgagaatccaa 12828301  T
Q  109 agagaatttctttgggggaggggtatgcggcggtaggaaaattaattgggtgaggtggaaattggtttgccaaactaagaacaagggtggtttaggtgtg 208  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12828300 agagaatttcttt-ggggaggggtacgcggcggtaggaaaattaattgggtgaggtggaaattggtttgccaaactaagaacaacggtggtttaggtgtg 12828202  T
Q  209 catgatgttagaatccttaatgttagt 235  Q
      |||||||||||||||||||||||||    
T  12828201 tgtgatgttagaatccttaatgttagt 12828175  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 168
Target Start/End: Original strand, 37607101 - 37607210
Alignment:
Q  58 tctttcttgaagataccggtgaaagtgtggcagagaattgtgagaatccaaagagaatttctttgggggaggggtatgcggcggtaggaaaattaattgg 157  Q
    ||||| || ||||| |||||| ||||||||  |||  | || |||||||||||||||||||||| ||||||||||  | || |||| ||| |||||||||    
T  37607101 tcttttttaaagatgccggtgcaagtgtggaggagggtggttagaatccaaagagaatttcttt-ggggaggggtgggtgggggtaagaagattaattgg 37607199  T
Q  158 gtgaggtggaa 168  Q
     ||| ||||||    
T  37607200 atgaagtggaa 37607210  T

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Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 28570598 - 28570824
Alignment:
Q  9 gattattcttctaaattcggtattaaatgcgatacctattttctatttgtctttcttgaagataccggtgaaagtgtggcagagaattgtgagaatccaa 108  Q
    |||||| || ||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||| || |||||||  |||| |||||| |||||||| |||    
T  28570598 gattatcctcctaaattcggtgttaaatgtgattcctattttctacttgtctttcttgaagatgccagtgaaagcttggcggagaatagtgagaattcaa 28570697  T
Q  109 agagaatttctttgggggaggggtatgcggcggtaggaaaattaattgggtgaggtggaaattggtttgccaa-actaaga-acaagggtggtttaggtg 206  Q
    |||||||| |||| ||||||| ||  | | |||||| || |||| ||||||||| ||||||| |||||| ||| || | || | || |||||| ||||||    
T  28570698 agagaattccttt-ggggaggtgtgggagccggtagaaagattagttgggtgagatggaaatgggtttgtcaacacaaggatataatggtggtctaggtg 28570796  T
Q  207 tgcatgatgttagaatccttaatgttag 234  Q
    |||  |||||||||||||| ||||||||    
T  28570797 tgcgcgatgttagaatcctaaatgttag 28570824  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 47819053 - 47819277
Alignment:
Q  9 gattattcttctaaattcggtattaaatgcgatacctattttctatttgtctttcttgaagataccggtgaaagtgtggcagagaattgtgagaatccaa 108  Q
    |||| ||||||| || ||| | |||||||| ||| ||||||||||||||||||| |||||||| ||||| || ||||||  || ||||||| |||| |||    
T  47819053 gattgttcttcttaactcgatgttaaatgcaatatctattttctatttgtctttattgaagatgccggttaatgtgtggaggaaaattgtgggaattcaa 47819152  T
Q  109 agagaatttctttgggggaggggtatgcggcggtaggaaaattaattgggtgaggtggaaattggtttgccaaactaagaacaagggtggtttaggtgtg 208  Q
    |||||||| ||||  |||||| ||| | || ||||||||||||| || ||| |||||||    |||||| ||||| ||  | || |||||| ||||||||    
T  47819153 agagaattccttt-tgggaggtgtaggtggtggtaggaaaattagttaggttaggtggagtacggtttgtcaaacgaaagagaatggtggtctaggtgtg 47819251  T
Q  209 catgatgttagaatccttaatgttag 234  Q
    | |||||||||||| |||||| ||||    
T  47819252 cgtgatgttagaattcttaatattag 47819277  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 42749961 - 42749867
Alignment:
Q  82 gtgtggcagagaattgtgagaatccaaagagaatttctttgggggaggggtatgcggcggtaggaaaattaattgggtgaggtggaaattggtttg 177  Q
    ||||||| ||| || |||||||| |||||||||||||||| ||||||| ||  | || |||||||| |||| ||||||||||||||| ||||||||    
T  42749961 gtgtggcggaggatagtgagaattcaaagagaatttcttt-ggggaggagtgggaggtggtaggaagattagttgggtgaggtggaagttggtttg 42749867  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 4864529 - 4864436
Alignment:
Q  73 ccggtgaaagtgtggcagagaattgtgagaatccaaagagaatttctttgggggaggggtatgcggcggtaggaaaattaattgggtgaggtgga 167  Q
    ||||||||||| | | |||  ||||| |||||||||||||| ||||||| |||| || ||| | || || ||||||||||||||||||| |||||    
T  4864529 ccggtgaaagttttgaagaatattgttagaatccaaagagagtttcttt-ggggtggtgtagggggaggaaggaaaattaattgggtgaagtgga 4864436  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 19470972 - 19471042
Alignment:
Q  55 ttgtctttcttgaagataccggtgaaagtgtggcagagaattgtgagaatccaaagagaatttctttgggg 125  Q
    |||||||||||||| || |||||  |||||||  |||   |||| ||||||||||||||||||||||||||    
T  19470972 ttgtctttcttgaaaatgccggttcaagtgtgcaagaaggttgttagaatccaaagagaatttctttgggg 19471042  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 45243547 - 45243579
Alignment:
Q  93 aattgtgagaatccaaagagaatttctttgggg 125  Q
    ||||||||||||||||||||| |||||||||||    
T  45243547 aattgtgagaatccaaagagagtttctttgggg 45243579  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 13853243 - 13853354
Alignment:
Q  14 ttcttctaaattcggtattaaatgcgatacctattttctatttgtctttcttgaagataccggtgaaagtgtggcagagaattgtgagaatccaaagaga 113  Q
    |||| |||||||||||  ||||| | || || ||||| || ||||| || || ||||| |||||  |||||||| |||||||||| ||| ||||||||||    
T  13853243 ttctcctaaattcggtcctaaattcaatcccaattttttacttgtcgttttttaagatgccggtacaagtgtggaagagaattgttagagtccaaagaga 13853342  T
Q  114 atttctttgggg 125  Q
    ||| ||||||||    
T  13853343 attcctttgggg 13853354  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 17196282 - 17196364
Alignment:
Q  43 cctattttctatttgtctttcttgaagataccggtgaaagtgtggcagagaattgtgagaatccaaagagaatttctttgggg 125  Q
    ||||| ||||||||||||||| ||||||| ||| | |||||||||  || ||| || |||||||||| ||| |||||||||||    
T  17196282 cctatcttctatttgtctttcatgaagatgccgataaaagtgtggaggaaaatagttagaatccaaatagagtttctttgggg 17196364  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 16079256 - 16079361
Alignment:
Q  20 taaattcggtattaaatgcgatacctattttctatttgtctttcttgaagataccggtgaaagtgtggcagagaattgtgagaatccaaagagaatttct 119  Q
    ||||| ||||||| ||||| || ||||||||| || | ||||| |||||| | | |||||| |||||| ||||| | |||| ||| ||||||||||||||    
T  16079256 taaatgcggtattgaatgctattcctattttccatctttcttttttgaagttgctggtgaaggtgtggaagagagtggtgaaaattcaaagagaatttct 16079355  T
Q  120 ttgggg 125  Q
     |||||    
T  16079356 atgggg 16079361  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 21943802 - 21943691
Alignment:
Q  20 taaattcggtattaaatgcgatacctattttctatttgtctttcttgaagataccggtgaaagtgtggcagagaattgtgagaatccaaagagaatttct 119  Q
    ||||| ||||||| || || || |||||||| || || ||||| || ||| | |||||||  |||||| ||| | | |||||||| ||||||||||||||    
T  21943802 taaatgcggtattgaacgccattcctattttttacttatcttttttcaagttgccggtgagggtgtggaagaaagtggtgagaattcaaagagaatttct 21943703  T
Q  120 ttgggggagggg 131  Q
    ||||||| ||||    
T  21943702 ttgggggggggg 21943691  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 40754843 - 40754773
Alignment:
Q  55 ttgtctttcttgaagataccggtgaaagtgtggcagagaattgtgagaatccaaagagaatttctttgggg 125  Q
    ||||| ||||||||||| |||||  |||||||| ||| |||||| ||| | ||||| ||||||||||||||    
T  40754843 ttgtcgttcttgaagatgccggttcaagtgtggaagaaaattgttagagttcaaagggaatttctttgggg 40754773  T

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