View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_69 (Length: 247)
Name: NF1858_low_69
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_69 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 34721155 - 34721392
Alignment:
| Q |
1 |
aagcaaatagccggcatcaacaacagatgatcaaaatcaatctgtaagcactaactaaaacttagaatgcagtatattatatgaagtgagcaatgcagtc |
100 |
Q |
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| T |
34721155 |
aagcaaatcgccggcatcaacaacagatgatcaaaatcaatctgtaagcactaactaaaacttagaatgcagtatattatatgaagtgagcaatgcagtc |
34721254 |
T |
|
| Q |
101 |
tagagtatgcatatattgaatcaatgattgatattgtgtatgcatatattgaatccagagttcagtaggtaaatcaattaatatacttagacccaaaaaa |
200 |
Q |
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| T |
34721255 |
tagagtatgcatatattgaatcaatgattgatattgtgtatgcatatattgaatccagagttcagtaggtaaatcaattaatatacttagacccaaaaaa |
34721354 |
T |
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| Q |
201 |
tattcatgaaatatatatcaatctttattttttatttt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
34721355 |
tattcatgaaatatatatcaatctttattttttatttt |
34721392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 27014036 - 27014275
Alignment:
| Q |
1 |
aagcaaatagccggcatcaacaacagatgatcaaaatcaatctgtaagcactaactaaaacttagaatgcagtatattatatgaagtgagcaatgcagtc |
100 |
Q |
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|||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27014036 |
aagcaattcgccagcatcaacaacagatgatcataatcaatctgtaagcactaactaaaacttagaatgcagtatattatatgaagtgagcaatacagtc |
27014135 |
T |
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| Q |
101 |
tagagtatgcatatattgaatcaatgattgatattgtgtatgcatatattgaatccagagttcagtaggtaaatcaattaatatacttagacccaaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27014136 |
tagagtatgcatatattgaatcaatgattgatattgtgtatgcatatattgaatccagagttcagtaggtaaatcaattaatatacttagacccaaaaaa |
27014235 |
T |
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| Q |
201 |
tattcatgaa--atatatatcaatctttattttttatttt |
238 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |
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| T |
27014236 |
tattcatgaaatatatatatcaatctttattttttatttt |
27014275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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