View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_7 (Length: 527)
Name: NF1858_low_7
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 6 - 512
Target Start/End: Complemental strand, 42355205 - 42354698
Alignment:
| Q |
6 |
ccaagaatatggttggtttgaactcattaaaagtccacaaacaaaaccatcaccagaagttagaccaaggaatggaaactgagatggtgttccataaact |
105 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42355205 |
ccaacaatatggttgatttgaactcattaaaagtccacaaacaaaaccatcaccagaagttagaccaaggaatggaaactgagatggtgttccataaact |
42355106 |
T |
|
| Q |
106 |
atggctgagttcattccataacatgtcacagtgtgagatccatctgatttcaagccacagaaagcagaacctttatctccataagaaacagcaattgatg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42355105 |
atggctgagttcattccataacatgtcacagtgtgagatccatctgatttcaagccacagaaagcagaacctttatctccataagaaacagcaattgatg |
42355006 |
T |
|
| Q |
206 |
acatggaaccaagaccagttacttttgaccataaccatgaaaaaacaacaacctcaaataaaatagtattcaaaaggtaggttgagaattgttttcttga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42355005 |
acatggaaccaagaccagttacttttgaccataaccatgaaaaaacaacaacctcaaataaaatagtattcaaaaggtaggttgagaattgttttcttga |
42354906 |
T |
|
| Q |
306 |
gaaccccatgatacctagagactcaaaaac-ttattttataaccaaaaaggttgaatttttactaataatgttggttggacttgagacatcacatactct |
404 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42354905 |
gaaccccatgatacctagagactcaaaaactttattttataaccaaaaaggttgaatttttactaataatgttggttggacttgagacatcacatactct |
42354806 |
T |
|
| Q |
405 |
tgttgacttccacctttcatttgatgaataaaatatacctattgattactcagcaagaaacatgacaaatattgttgtttaaagagttcagaaaaagact |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42354805 |
tgttgacttccacctttcatttgatgaataaaatatacctattgataactcagcaagaaacatgacaaatattgttgtttaaagagttcagaaaaagact |
42354706 |
T |
|
| Q |
505 |
aaaaaact |
512 |
Q |
| |
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|||||||| |
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| T |
42354705 |
aaaaaact |
42354698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 25374369 - 25374583
Alignment:
| Q |
6 |
ccaagaatatggttggtttgaactcattaaaagtccacaaacaaaaccatcaccagaagttagaccaaggaatggaaactgagatggtgttccataaact |
105 |
Q |
| |
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|||| |||| ||||| |||||| ||||| ||| ||||||||||| |||||||||| ||||| ||| | |||| || || | ||||||| |||| | | |
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| T |
25374369 |
ccaacaataaggttgatttgaatccattagaagaccacaaacaaatccatcaccagcggttaggccatgaaatgagaaatgggttggtgtttcatagatt |
25374468 |
T |
|
| Q |
106 |
atggctgagttcattccataacatgtcacagtgtgagatccatctgatttcaagccacagaaagcagaacctttatctccataagaaacagcaattgatg |
205 |
Q |
| |
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|| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||| ||| | || ||||| || ||||| || | ||||| |||| |
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| T |
25374469 |
atagctgagttggatccataacatgtcacagtatgagatccatctgatttcaaaccacaaaaaactgagcctttttcaccatatgagattgcaatggatg |
25374568 |
T |
|
| Q |
206 |
acatggaaccaagac |
220 |
Q |
| |
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||||||||||||||| |
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| T |
25374569 |
acatggaaccaagac |
25374583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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