View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_73 (Length: 242)
Name: NF1858_low_73
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_73 |
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| [»] scaffold0440 (2 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 14515 - 14600
Alignment:
| Q |
130 |
ccaacctttaattgaacgatggcaatgaacgaaagagaaaatgaagaagaaacgatggagcagaagaaaatcaaacaaagtcgtat |
215 |
Q |
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| T |
14515 |
ccaacctttaattgaacgatggctatgaacgaaagagaaaatgaagaagaaacgatggaacagaagaaaatcaaacaaagtcgtat |
14600 |
T |
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Target: scaffold0440; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14386 - 14427
Alignment:
| Q |
1 |
catacaaaactcaatttctcaatcgactaagctggatgagca |
42 |
Q |
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| T |
14386 |
catacaaaactcaatttctcaatcgactaagctggatgagca |
14427 |
T |
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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 25456739 - 25456687
Alignment:
| Q |
134 |
cctttaattgaacgatggcaatgaacgaaagagaaaatgaagaagaaacgatg |
186 |
Q |
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| T |
25456739 |
cctttaattgaacgatggcgatgaacgaaagagaaaatgaagaagaaacgatg |
25456687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25456872 - 25456833
Alignment:
| Q |
1 |
catacaaaactcaatttctcaatcgactaagctggatgag |
40 |
Q |
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| T |
25456872 |
catacaaaactcaatttctcattcgactaagctggatgag |
25456833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 25456653 - 25456620
Alignment:
| Q |
191 |
agaagaaaatcaaacaaagtcgtataacctgcct |
224 |
Q |
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| T |
25456653 |
agaagaaaatgaaacaaagtcgtataacctgcct |
25456620 |
T |
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