View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_75 (Length: 241)
Name: NF1858_low_75
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_75 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0455 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 41419595 - 41419823
Alignment:
| Q |
13 |
attacaatatcatcaaaccttcttgttttaaggcttaacctcaaattactatgccaacaaggtttagtgttattctcagacaccataacctccttattat |
112 |
Q |
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| T |
41419595 |
attacaatatcatcaaaccttcttgttttaaggcttaacctcaaattactatgccaacaaggtttagtgttcttctcagacaccataacctccttattat |
41419694 |
T |
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| Q |
113 |
tctgaaccacaaatgacctaatcctttgtaaagcaatttgcacatctctatcatccatgttagcataacacactctaaaccaccctggctcagaacaatg |
212 |
Q |
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| T |
41419695 |
tctgaaccacaaatgacctaatcctttgtaaagcaatttgcacatctctatcatccatgttagcataacacactctaaaccaccctggctcagaacaatg |
41419794 |
T |
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| Q |
213 |
aaaagaaacaccaggtgaaacattaatct |
241 |
Q |
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| T |
41419795 |
aaaagaaacaccaggtgaaacattaatct |
41419823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 8163 - 8307
Alignment:
| Q |
96 |
cataacctccttattattctgaaccacaaatgacctaatcctttgtaaagcaatttgcacatctctatcatccatgttagcataacacactctaaaccac |
195 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8163 |
cataacctccttat-attttgaaccacaaatgacctaatcctttgtaaagaaattttcacatttctatcatccatgttagcataacacactctaaaccac |
8261 |
T |
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| Q |
196 |
cctggctcagaacaatgaaaagaaacaccaggtgaaacattaatct |
241 |
Q |
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| T |
8262 |
cctggctcagaacaatgaaaagaaacaccaggtgaaacattaatct |
8307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 28129576 - 28129720
Alignment:
| Q |
96 |
cataacctccttattattctgaaccacaaatgacctaatcctttgtaaagcaatttgcacatctctatcatccatgttagcataacacactctaaaccac |
195 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28129576 |
cataacctccttat-attttgaaccacaaatgacctaatcctttgtaaagaaattttcacatttctatcatccatgttagcataacacactctaaaccac |
28129674 |
T |
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| Q |
196 |
cctggctcagaacaatgaaaagaaacaccaggtgaaacattaatct |
241 |
Q |
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| T |
28129675 |
cctggctcagaacaatgaaaagaaacaccaggtgaaacattaatct |
28129720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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