View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_76 (Length: 241)
Name: NF1858_low_76
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_76 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 16150603 - 16150379
Alignment:
| Q |
1 |
aaatttgattgatttgaacaatcttccaaacaatgaaccatgtggtttttcagaaagtggagtagttgagttgagtagcaatgaacaagaagcaattact |
100 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16150603 |
aaatttggttgatttgaacaatcttccaaacaatgaaccatgtggtaattcagaaagtggagtagttgagttgagtagcaatgaacaagaagcaattact |
16150504 |
T |
|
| Q |
101 |
attgaaaaccattttgaaccttttatagggcagtgttttctaagtgaggaagaagctttcaaattttatgagaattattccaaaaggagtgggttctcaa |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16150503 |
attgaaaacgattttgaaccttttatagggcagtgttttctaagtgaggaagaagctttcaaattttatgagaattatgccaaaaggagtgggttctcaa |
16150404 |
T |
|
| Q |
201 |
ttagaaaaggtaggtttgttaataa |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
16150403 |
ttagaaaaggtaggtttgttaataa |
16150379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 22141656 - 22141602
Alignment:
| Q |
115 |
tgaaccttttatagggcagtgttttctaagtgaggaagaagctttcaaattttat |
169 |
Q |
| |
|
|||||||||||| || ||||||||||||| |||| ||||||||| |||||||||| |
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|
| T |
22141656 |
tgaaccttttattggtcagtgttttctaaatgagaaagaagcttccaaattttat |
22141602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 3669775 - 3669718
Alignment:
| Q |
112 |
ttttgaaccttttatagggcagtgttttctaagtgaggaagaagctttcaaattttat |
169 |
Q |
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||||||||||||||| || ||||||||||||| |||| ||||||||| || ||||||| |
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| T |
3669775 |
ttttgaaccttttattggtcagtgttttctaaatgagaaagaagcttccagattttat |
3669718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 23301708 - 23301932
Alignment:
| Q |
1 |
aaatttgattgatttgaacaatcttccaaacaatgaaccatgtggtttttcagaaagtggagtagttgagttgagtagcaatgaacaagaagcaattact |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23301708 |
aaatttggttgatttgaacaatcttccaaacaatgaaccatgtggtaattcagaaagtggagtagttgagttgagtagcaatgaacaagaagcaattact |
23301807 |
T |
|
| Q |
101 |
attgaaaaccattttgaaccttttatagggcagtgttttctaagtgaggaagaagctttcaaattttatgagaattattccaaaaggagtgggttctcaa |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23301808 |
attgaaaacgattttgaaccttttatagggcaatgttttctaagtgaggaagaagctttcaaattttatgagaattatgccaaaaggagtgggttctcaa |
23301907 |
T |
|
| Q |
201 |
ttagaaaaggtaggtttgttaataa |
225 |
Q |
| |
|
||| ||||||||||||||||||||| |
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|
| T |
23301908 |
ttaaaaaaggtaggtttgttaataa |
23301932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 26926095 - 26926252
Alignment:
| Q |
3 |
atttgattgatttgaacaatcttccaaacaatgaaccatgtggtttttcagaaagtggagtagttgagttgagtagcaatgaacaagaagcaattactat |
102 |
Q |
| |
|
|||| ||||||||||||||| ||||||| ||| ||||||||| | |||||||| || |||| |||| ||||| | | | || || ||| |||||||||| |
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| T |
26926095 |
atttaattgatttgaacaatgttccaaataataaaccatgtgataattcagaaaatgaagtaattgatttgagcaacgacgagcaggaaacaattactat |
26926194 |
T |
|
| Q |
103 |
t--gaaaaccattttgaaccttttatagggcagtgttttctaagtgaggaagaagctt |
158 |
Q |
| |
|
||||| ||||||||||||||| ||||| |||||| |||||||||||||||||| |
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|
| T |
26926195 |
atcgaaaattgttttgaaccttttattgggcaatgttttttaagtgaggaagaagctt |
26926252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 4653195 - 4652971
Alignment:
| Q |
1 |
aaatttgattgatttgaacaatcttccaaacaatgaaccatgtggtttttcagaaagtggagtagttgagttgagtagcaatgaacaagaagcaattact |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4653195 |
aaatttggttgatttgaacaatcttccaaacaatgaaccatgtggtaattcagaaagtggagtagttgagttgagtagcaatgaacaagaagcaattact |
4653096 |
T |
|
| Q |
101 |
attgaaaaccattttgaaccttttatagggcagtgttttctaagtgaggaagaagctttcaaattttatgagaattattccaaaaggagtgggttctcaa |
200 |
Q |
| |
|
||||||||| |||| ||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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|
| T |
4653095 |
attgaaaactatttcgaaccttttattggacaatattttctaagtgaggaagaagctttcaaattttatgagaattatgccaaaatgagtgggttctcaa |
4652996 |
T |
|
| Q |
201 |
ttagaaaaggtaggtttgttaataa |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4652995 |
ttagaaaaggtaggtttgttaataa |
4652971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 8925525 - 8925359
Alignment:
| Q |
1 |
aaatttgattgatttgaacaatcttccaaacaatgaaccatgtggtttttcagaaagtggagtagttgagttgagtagcaatgaacaagaagcaattact |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8925525 |
aaatttggttgatttgaacaatcttccaaacaatgaaccatgtggtaattcagaaagtgaagtagttgagttgagtagcaatgaacaagaagcaattact |
8925426 |
T |
|
| Q |
101 |
attgaaaaccattttgaaccttttatagggcagtgttttctaagtgaggaagaagctttcaaatttt |
167 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
8925425 |
attgaaaacgattttgaaccttttatagggcggtgttttctaagtgaggaagaagctttcaaatttt |
8925359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 8935782 - 8935616
Alignment:
| Q |
1 |
aaatttgattgatttgaacaatcttccaaacaatgaaccatgtggtttttcagaaagtggagtagttgagttgagtagcaatgaacaagaagcaattact |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8935782 |
aaatttggttgatttgaacaatcttccaaacaatgaaccatgtggtaattcagaaagtgaagtagttgagttgagtagcaatgaacaagaagcaattact |
8935683 |
T |
|
| Q |
101 |
attgaaaaccattttgaaccttttatagggcagtgttttctaagtgaggaagaagctttcaaatttt |
167 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
8935682 |
attgaaaacgattttgaaccttttatagggcggtgttttctaagtgaggaagaagctttcaaatttt |
8935616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1000650 - 1000607
Alignment:
| Q |
1 |
aaatttgattgatttgaacaatcttccaaacaatgaaccatgtg |
44 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
1000650 |
aaatttaattgatttgaacaatcttccaaataataaaccatgtg |
1000607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1000578 - 1000533
Alignment:
| Q |
1 |
aaatttgattgatttgaacaatcttccaaacaatgaaccatgtggt |
46 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| || |||||||| |
|
|
| T |
1000578 |
aaatttaattgatttgaacaatcttccaaataataaatcatgtggt |
1000533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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