View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1858_low_77 (Length: 240)

Name: NF1858_low_77
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1858_low_77
NF1858_low_77
[»] chr2 (2 HSPs)
chr2 (124-240)||(37553259-37553375)
chr2 (1-90)||(37553140-37553229)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 37553259 - 37553375
Alignment:
Q  124 ggagtaagtgtggtttacataaatatgaacattgtaacataaagagtggtgatgtattgaatacaatttttcattcaataattttcacatctactctata 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37553259 ggagtaagtgtggtttacataaatatgaacattgtaacataaagagtggtgatgtattgaatacaatttttcattcaataattttcacatctactctata 37553358  T
Q  224 ttcaaattgtatttctt 240  Q
    |||||||||||||||||    
T  37553359 ttcaaattgtatttctt 37553375  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 37553140 - 37553229
Alignment:
Q  1 aatatgtgttggtttgagactttgaagtctccttctcttaaggtctgaggctcaactttccctgaagccaatttcagtggactaatttga 90  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  37553140 aatatgtgttggtttgagactttgaagtctccttctctcaaggtctgaggctcaactctccctgaagccaatttcagtagactaatttga 37553229  T

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