View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1858_low_79 (Length: 239)

Name: NF1858_low_79
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1858_low_79
NF1858_low_79
[»] chr7 (13 HSPs)
chr7 (103-223)||(33602044-33602166)
chr7 (150-223)||(33601427-33601500)
chr7 (150-223)||(46280289-46280363)
chr7 (150-224)||(48507701-48507777)
chr7 (151-223)||(27863742-27863815)
chr7 (150-223)||(45338428-45338501)
chr7 (152-209)||(4970824-4970882)
chr7 (150-223)||(17944360-17944434)
chr7 (150-222)||(39907782-39907855)
chr7 (150-222)||(39967899-39967972)
chr7 (150-209)||(7467588-7467648)
chr7 (149-192)||(20234461-20234505)
chr7 (150-209)||(43694601-43694661)
[»] chr2 (5 HSPs)
chr2 (150-219)||(41851514-41851584)
chr2 (150-223)||(45229491-45229564)
chr2 (150-223)||(12464490-12464564)
chr2 (150-223)||(41241149-41241223)
chr2 (150-209)||(39659540-39659600)
[»] chr4 (6 HSPs)
chr4 (150-222)||(53294132-53294205)
chr4 (150-223)||(17822882-17822956)
chr4 (150-209)||(50681120-50681180)
chr4 (155-223)||(21731673-21731742)
chr4 (150-209)||(15177233-15177293)
chr4 (156-223)||(16199998-16200066)
[»] chr3 (15 HSPs)
chr3 (158-217)||(18405854-18405914)
chr3 (149-223)||(53789478-53789553)
chr3 (150-223)||(30443872-30443946)
chr3 (150-217)||(44061046-44061114)
chr3 (149-223)||(47132309-47132384)
chr3 (150-223)||(20880455-20880529)
chr3 (150-207)||(30956659-30956717)
chr3 (150-207)||(30972471-30972529)
chr3 (184-222)||(33883768-33883806)
chr3 (150-223)||(35959473-35959547)
chr3 (150-223)||(36631068-36631142)
chr3 (150-223)||(39980708-39980782)
chr3 (150-222)||(21367646-21367719)
chr3 (150-217)||(584025-584093)
chr3 (150-209)||(20257514-20257574)
[»] chr1 (13 HSPs)
chr1 (150-209)||(3234046-3234106)
chr1 (150-205)||(27976574-27976630)
chr1 (150-209)||(17603415-17603475)
chr1 (152-206)||(39596578-39596633)
chr1 (150-223)||(14576671-14576744)
chr1 (150-223)||(24915068-24915142)
chr1 (153-222)||(49888749-49888819)
chr1 (158-223)||(49938734-49938800)
chr1 (150-223)||(47432075-47432148)
chr1 (151-223)||(51688685-51688757)
chr1 (150-209)||(13809977-13810037)
chr1 (183-223)||(15477578-15477618)
chr1 (151-222)||(27820355-27820427)
[»] chr6 (4 HSPs)
chr6 (150-220)||(6909892-6909963)
chr6 (152-223)||(34430478-34430550)
chr6 (150-222)||(837234-837307)
chr6 (150-222)||(9093574-9093647)
[»] chr8 (7 HSPs)
chr8 (150-223)||(18133635-18133709)
chr8 (150-223)||(26771244-26771318)
chr8 (150-222)||(27028810-27028883)
chr8 (150-208)||(42043377-42043436)
chr8 (150-223)||(10758274-10758347)
chr8 (152-209)||(6881908-6881965)
chr8 (158-209)||(11861791-11861843)
[»] chr5 (3 HSPs)
chr5 (150-223)||(16937900-16937974)
chr5 (150-223)||(29925820-29925894)
chr5 (158-221)||(43300865-43300929)


Alignment Details
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 33602166 - 33602044
Alignment:
Q  103 gatctggaaaatcaacgtaacag--caatttcgttatagnnnnnnngtattaaattgtttttgtatttgctataagtggttttataagctatcttagaga 200  Q
    |||||||||||||||||||||||  ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33602166 gatctggaaaatcaacgtaacagagcaatttcgttatagtttttttgtattaaattgtttttgtatttgctataagtggttttataagctatcttagaga 33602067  T
Q  201 acttatgaatttaagctgaaaaa 223  Q
    |||||||||||||||||||||||    
T  33602066 acttatgaatttaagctgaaaaa 33602044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 33601500 - 33601427
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33601500 ttaaattatttttgtatttgctataagttgttttataagctatcttagagaacttatgaatttaagctgaaaaa 33601427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 46280363 - 46280289
Alignment:
Q  150 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||||||||||||| ||||||||| || ||||||||||||| || |||||||||||||  || |||||||||    
T  46280363 ttaaattgtttttgtatatgctataagctgtttttataagctatattggagaacttatgaaaataggctgaaaaa 46280289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 48507701 - 48507777
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatc-ttagagaacttatgaatttaagctgaaaaat 224  Q
    ||||||||||||||||| ||||||||   ||||| |||||| ||| |||||||||||||||| ||||||||||||||    
T  48507701 ttaaattgtttttgtatatgctataaactgttttcataagccatccttagagaacttatgaaattaagctgaaaaat 48507777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 27863815 - 27863742
Alignment:
Q  151 taaattgtttttgtatttgctataagtggtttta-taagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    |||||| | ||||||| |||||||||| |||||| ||| |||| ||||||||||||||||  ||||||||||||    
T  27863815 taaattttatttgtatatgctataagttgttttaataaactatattagagaacttatgaacataagctgaaaaa 27863742  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 45338428 - 45338501
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||||||||||||| |||| ||||| ||||| |||||||| || ||||||| |||||  |||| |||||||    
T  45338428 ttaaattgtttttgtatatgctgtaagttgttttttaagctatattggagaactgatgaaaataagttgaaaaa 45338501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 4970882 - 4970824
Alignment:
Q  152 aaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaa 209  Q
    ||||||||||||||| ||||||||||  |||| ||||| ||| ||||||||||||||||    
T  4970882 aaattgtttttgtatatgctataagttctttttataagatatattagagaacttatgaa 4970824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 17944434 - 17944360
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||||||||||||| || | ||||| ||||| ||||| |||||| || || ||||||| |||||||||||||    
T  17944434 ttaaattgtttttgtatatgttgtaagttgttttcataagttatcttggataatttatgaaattaagctgaaaaa 17944360  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 39907782 - 39907855
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaa 222  Q
    |||||||||||||||||  |||||||   ||||| |||| ||||||||||||||| |||||  |||||||||||    
T  39907782 ttaaattgtttttgtataagctataaactgttttcataaactatcttagagaactaatgaaaataagctgaaaa 39907855  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 39967899 - 39967972
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaa 222  Q
    |||||||||||| ||| | ||||||||| ||||| ||||||||||| |||||||| |||||  |||| ||||||    
T  39967899 ttaaattgttttcgtactagctataagttgttttcataagctatctgagagaactaatgaaaataagttgaaaa 39967972  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 7467588 - 7467648
Alignment:
Q  150 ttaaattgttttt-gtatttgctataagtggttttataagctatcttagagaacttatgaa 209  Q
    ||||||||||||| |||| ||||||||||| ||| | ||| |||||||| |||||||||||    
T  7467588 ttaaattgttttttgtatatgctataagtgatttcagaagttatcttagtgaacttatgaa 7467648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 20234461 - 20234505
Alignment:
Q  149 attaaattgtttttgtatttgctataagtggtttta-taagctat 192  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||    
T  20234461 attaaattgtttttgtaattgctataagttgttttactaagctat 20234505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 43694661 - 43694601
Alignment:
Q  150 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaa 209  Q
    ||||||||||||||||| ||||||||| || ||||||||||||| |   ||||||||||||    
T  43694661 ttaaattgtttttgtatatgctataagctgtttttataagctatatcgaagaacttatgaa 43694601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 41851514 - 41851584
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctga 219  Q
    ||||||||||||||||| |||||||||| ||||| | |||||||||| ||||| ||||||| |||||||||    
T  41851514 ttaaattgtttttgtatatgctataagttgttttcagaagctatcttggagaatttatgaaattaagctga 41851584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 45229491 - 45229564
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||||||||||||| || ||| | || ||| |||||||||||| |||||||||||||  ||||||||||||    
T  45229491 ttaaattgtttttgtatatgttatcattgttttcataagctatcttcgagaacttatgaaaataagctgaaaaa 45229564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 12464564 - 12464490
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||||||||||||| |||||||||   |||| |||||||||||| |||||||| ||||  ||||||||||||    
T  12464564 ttaaattgtttttgtatatgctataagctattttcataagctatcttggagaacttgtgaaaataagctgaaaaa 12464490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 41241223 - 41241149
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||||||||||||| |||||||||| |||||  |||| |||||| || ||||| |||| |||||||||||||    
T  41241223 ttaaattgtttttgtatatgctataagtagttttcctaagttatcttggaaaacttgtgaaattaagctgaaaaa 41241149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 39659600 - 39659540
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaa 209  Q
    ||||||||||||||| | || ||||| | ||||| ||||||||| ||||||||||||||||    
T  39659600 ttaaattgtttttgtctatgttataacttgtttttataagctatattagagaacttatgaa 39659540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 53294205 - 53294132
Alignment:
Q  150 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaa 222  Q
    ||||||||||||||||| ||||||||| || |||||||| |||| ||||||||||||||||   ||||||||||    
T  53294205 ttaaattgtttttgtatatgctataagttgtttttataaactatattagagaacttatgaaaacaagctgaaaa 53294132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 17822956 - 17822882
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    |||||||||| || ||| |||||||||| ||||| |||||||||||| |||||||||||||  |||||| |||||    
T  17822956 ttaaattgttattttatatgctataagttgttttcataagctatcttggagaacttatgaaaataagctaaaaaa 17822882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 50681180 - 50681120
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggttt-tataagctatcttagagaacttatgaa 209  Q
    ||||||||||||||||| |||||||||| |||| |||||||||| || ||||| |||||||    
T  50681180 ttaaattgtttttgtatatgctataagttgtttatataagctatattggagaaattatgaa 50681120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 21731742 - 21731673
Alignment:
Q  155 ttgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    |||||||||||| ||||||||| || ||||||||||||| || ||||| |||||||  |||| |||||||    
T  21731742 ttgtttttgtatgtgctataagttgtttttataagctatattggagaatttatgaaagtaagttgaaaaa 21731673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 15177293 - 15177233
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtgg-ttttataagctatcttagagaacttatgaa 209  Q
    |||||||||| || ||| |||||||||||| |||||||||||||  ||||||||| |||||    
T  15177293 ttaaattgttcttctatgtgctataagtggtttttataagctatactagagaactaatgaa 15177233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 16200066 - 16199998
Alignment:
Q  156 tgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||||||| |||||||||  ||||| |||||||||||| ||| |||||||||  |||||| |||||    
T  16200066 tgtttttgtatatgctataagctgttttcataagctatcttggaggacttatgaaaataagctaaaaaa 16199998  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 18405914 - 18405854
Alignment:
Q  158 tttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagct 217  Q
    ||||||||| |||||||||| ||||| |||||||||||| ||||||||||||| |||||||    
T  18405914 tttttgtatatgctataagttgttttcataagctatcttggagaacttatgaaattaagct 18405854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 53789553 - 53789478
Alignment:
Q  149 attaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    |||||| |||||| |||| |||||||||| ||| | |||||||||| | ||||||||||||| |||||||||||||    
T  53789553 attaaaatgttttggtatatgctataagttgttatcataagctatcatggagaacttatgaaattaagctgaaaaa 53789478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 30443872 - 30443946
Alignment:
Q  150 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    |||||||| |||||||| ||||||||| || |||||||| |||| || |||||||||||||  ||||||||||||    
T  30443872 ttaaattgcttttgtatatgctataagctgtttttataaactatattggagaacttatgaaaataagctgaaaaa 30443946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 44061114 - 44061046
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagct 217  Q
    ||||||||||||| |||  ||||||||| ||||| ||| | |||||||||||||||||||| |||||||    
T  44061114 ttaaattgtttttctataagctataagttgttttcatatgatatcttagagaacttatgaaattaagct 44061046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 47132309 - 47132384
Alignment:
Q  149 attaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    |||||||||||||||||| ||||||| | || ||||||||||||| || ||||| |||||||  |||| |||||||    
T  47132309 attaaattgtttttgtatatgctataggttgtttttataagctatattggagaagttatgaaaataagttgaaaaa 47132384  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 20880455 - 20880529
Alignment:
Q  150 ttaaattgtttttgtatttgctat-aagtggttttataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||||||||||||| |||||| || || ||||| ||||||| || |||||||||||||  |||||| |||||    
T  20880455 ttaaattgtttttgtatatgctataaactgtttttaaaagctatattggagaacttatgaaaataagctcaaaaa 20880529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 30956717 - 30956659
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatg 207  Q
    |||||||||||||||||  ||||||||| ||||| | |||||||||| |||||||||||    
T  30956717 ttaaattgtttttgtataggctataagttgttttcaaaagctatcttggagaacttatg 30956659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 30972529 - 30972471
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatg 207  Q
    |||||||||||||||||  ||||||||| ||||| | |||||||||| |||||||||||    
T  30972529 ttaaattgtttttgtataggctataagttgttttcaaaagctatcttggagaacttatg 30972471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 33883806 - 33883768
Alignment:
Q  184 ataagctatcttagagaacttatgaatttaagctgaaaa 222  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  33883806 ataagctatcttagagaacttatgaaaataagctgaaaa 33883768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 35959547 - 35959473
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggttt-tataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||| ||||||||| |||| ||||| |||| |||||||||| |||||||| || ||||  ||||||||||||    
T  35959547 ttaaattatttttgtatatgctgtaagttgtttctataagctatattagagaatttttgaaaataagctgaaaaa 35959473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 36631142 - 36631068
Alignment:
Q  150 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||||||||||||  ||||||||| || |||||| |||||| || |||||||||||||  ||||| ||||||    
T  36631142 ttaaattgtttttgtacatgctataagttgtttttatgagctatattggagaacttatgaaaataagcagaaaaa 36631068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 39980708 - 39980782
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    |||||||||||||| |  |||||||||| ||||| ||||||||| || |||||||||||||  |||| |||||||    
T  39980708 ttaaattgtttttgaacatgctataagttgtttttataagctatattggagaacttatgaaaataagttgaaaaa 39980782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 21367646 - 21367719
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaa 222  Q
    |||||||||||| ||||    ||||||| ||||| |||||||||||| |||||||||||||  |||||||||||    
T  21367646 ttaaattgttttcgtataatgtataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaa 21367719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 584025 - 584093
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtg-gttttataagctatcttagagaacttatgaatttaagct 217  Q
    |||||||||||||||   ||||||||||  |||| ||||||||||||  |||||||||||| |||||||    
T  584025 ttaaattgtttttgttcatgctataagttagtttcataagctatcttgaagaacttatgaaattaagct 584093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 20257514 - 20257574
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggttttat-aagctatcttagagaacttatgaa 209  Q
    ||||||||||||||||| |||||||||| ||||| | ||||||| || |||| ||||||||    
T  20257514 ttaaattgtttttgtatatgctataagttgttttttgaagctatattggagagcttatgaa 20257574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 3234106 - 3234046
Alignment:
Q  150 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaa 209  Q
    ||||||||||||||||| ||||||||| || ||||||||||||| || |||||||||||||    
T  3234106 ttaaattgtttttgtatatgctataagttgtttttataagctatattggagaacttatgaa 3234046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 27976574 - 27976630
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaactta 205  Q
    ||||||||||||||||| |||||||||| ||||| |||||||||||| |||||||||    
T  27976574 ttaaattgtttttgtatatgctataagttgttttcataagctatcttcgagaactta 27976630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 17603475 - 17603415
Alignment:
Q  150 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaa 209  Q
    ||||||||||||||||| ||||||||| || ||||||||||||| || |||||||| ||||    
T  17603475 ttaaattgtttttgtatatgctataagttgtttttataagctatattggagaacttctgaa 17603415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 39596578 - 39596633
Alignment:
Q  152 aaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttat 206  Q
    |||||||||||||||  |||||||| ||||||||||||||||||| |||| |||||    
T  39596578 aaattgtttttgtataagctataagatggttttataagctatcttggagagcttat 39596633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 14576744 - 14576671
Alignment:
Q  150 ttaaattgtttttgtatttgctataa-gtggttttataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||||||||||||| ||||||||  |  ||||||||||||| ||||||||||| ||||  ||||||||||||    
T  14576744 ttaaattgtttttgtatatgctataatttttttttataagctatattagagaactt-tgaaaataagctgaaaaa 14576671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 24915142 - 24915068
Alignment:
Q  150 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||||||||||||| ||||||||| || ||| ||||||| |||| |||||||| ||||  |||| |||||||    
T  24915142 ttaaattgtttttgtatatgctataagctgttttcataagctgtcttggagaacttgtgaaaataagttgaaaaa 24915068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 49888749 - 49888819
Alignment:
Q  153 aattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaa 222  Q
    ||||||||| ||||  ||||| ||| ||||| ||||||||||||||||||||||||||  ||||| |||||    
T  49888749 aattgttttcgtataagctattagttgttttcataagctatcttagagaacttatgaaaataagccgaaaa 49888819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 49938734 - 49938800
Alignment:
Q  158 tttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||||| || ||||||| ||||| ||||||||| ||||||||||||||||  |||| |||||||    
T  49938734 tttttgtatatgttataagttgtttttataagctatattagagaacttatgaaaataagttgaaaaa 49938800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 47432075 - 47432148
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    |||||||||||||| || |||||||||  |||||||||| ||| ||  |||| |||||||  ||||||||||||    
T  47432075 ttaaattgtttttgaatatgctataaggtgttttataagttatattgaagaatttatgaaaataagctgaaaaa 47432148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 51688685 - 51688757
Alignment:
Q  151 taaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    |||||||||||||||  |||||||||| |||||  ||||||||| | ||| ||||||||| |||||||||||||    
T  51688685 taaattgtttttgtacatgctataagttgttttcgtaagctatcgtggag-acttatgaaattaagctgaaaaa 51688757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 13809977 - 13810037
Alignment:
Q  150 ttaaattgtttttgtatttgctata-agtggttttataagctatcttagagaacttatgaa 209  Q
    ||||||||||||||||| ||||||| | || |||||||| |||| ||||||||||| ||||    
T  13809977 ttaaattgtttttgtatatgctatatattgtttttataaactatattagagaacttgtgaa 13810037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 15477578 - 15477618
Alignment:
Q  183 tataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    |||||| ||| ||||||||||||||||| ||||||||||||    
T  15477578 tataagttatattagagaacttatgaatataagctgaaaaa 15477618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 27820427 - 27820355
Alignment:
Q  151 taaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaa 222  Q
    |||||||||| |||||  |||||| | || |||||||||||||||| ||||| |||||||  |||||||||||    
T  27820427 taaattgtttatgtataagctatatgctgtttttataagctatcttggagaatttatgaaaataagctgaaaa 27820355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 6909963 - 6909892
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaa 220  Q
    ||||||||||||||||| |||||||||| ||||| ||||  |||||| ||||| ||||||| ||||||||||    
T  6909963 ttaaattgtttttgtatatgctataagttgttttcataacatatcttggagaatttatgaaattaagctgaa 6909892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 34430550 - 34430478
Alignment:
Q  152 aaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||||||||||| || ||||||  ||||| |||||||||||| ||||| |||||||  ||||||||||||    
T  34430550 aaattgtttttgtatatgttataaggtgttttcataagctatcttggagaagttatgaaaataagctgaaaaa 34430478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 837307 - 837234
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaa 222  Q
    |||||||||||| || |  ||||||||| ||||| || ||||||||| |||||||||||||  |||||||||||    
T  837307 ttaaattgttttggtgtaagctataagtagttttcattagctatcttggagaacttatgaaaataagctgaaaa 837234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 9093647 - 9093574
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaa 222  Q
    |||||||||||| ||||  ||||||||  ||||| ||||||| |||||||||||||| |||  |||||||||||    
T  9093647 ttaaattgttttcgtataagctataagctgttttcataagctgtcttagagaacttaagaaaataagctgaaaa 9093574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 18133635 - 18133709
Alignment:
Q  150 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    |||||||| |||||||| | ||||||| ||||||||||| |||| || |||||||||||||  ||||||||||||    
T  18133635 ttaaattgcttttgtatatcctataagctggttttataaactatattggagaacttatgaaaataagctgaaaaa 18133709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 26771244 - 26771318
Alignment:
Q  150 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||||||||||||| ||||||||| |  ||||||||| ||| ||||||||||||||||  |||| |||||||    
T  26771244 ttaaattgtttttgtatatgctataagctttttttataagatatattagagaacttatgaaaataagttgaaaaa 26771318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 27028810 - 27028883
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaa 222  Q
    ||||||||||| ||||| |||||||||  ||||| |||||||||||| |||| ||||||||  |||||||||||    
T  27028810 ttaaattgtttgtgtatatgctataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaa 27028883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 42043436 - 42043377
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatga 208  Q
    |||||||||||||| || || ||||||| ||||| |||||||||||||||||||| ||||    
T  42043436 ttaaattgtttttggatatgatataagttgttttcataagctatcttagagaactaatga 42043377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 10758347 - 10758274
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggt-tttataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||||||||||||| |||||||||| || |||||||||||| ||||  ||||||||||   |||||||||||    
T  10758347 ttaaattgtttttgtatatgctataagttgtctttataagctatattag-caacttatgaaaacaagctgaaaaa 10758274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 6881908 - 6881965
Alignment:
Q  152 aaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaa 209  Q
    ||||||||||| ||| |||||||||  |||||||||||||  || |||||||||||||    
T  6881908 aaattgtttttatatatgctataagctgttttataagctaaattggagaacttatgaa 6881965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 11861791 - 11861843
Alignment:
Q  158 tttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaa 209  Q
    ||||||||| |||||||||| ||||| |||||||||  |||||||||||||||    
T  11861791 tttttgtatatgctataagttgtttttataagctataatagagaacttatgaa 11861843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 16937974 - 16937900
Alignment:
Q  150 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||||||||||||| ||||||||| || ||||||| ||||| || ||||||||| |||  ||||||||||||    
T  16937974 ttaaattgtttttgtatatgctataagttgtttttatacgctatattggagaacttaggaaaataagctgaaaaa 16937900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 29925820 - 29925894
Alignment:
Q  150 ttaaattgtttttgtatttgctataagtggttt-tataagctatcttagagaacttatgaatttaagctgaaaaa 223  Q
    ||||||||||| ||||| |||||||||| ||||  ||||||||| || |||||||||||||  |||| |||||||    
T  29925820 ttaaattgtttctgtatgtgctataagttgtttacataagctatattggagaacttatgaaaataagttgaaaaa 29925894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 43300865 - 43300929
Alignment:
Q  158 tttttgtatttgctataagtggtttta-taagctatcttagagaacttatgaatttaagctgaaa 221  Q
    ||||||||| | |||||||| |||||  ||||||||||| |||||||||||||  ||||||||||    
T  43300865 tttttgtatatcctataagttgtttttgtaagctatcttggagaacttatgaaaataagctgaaa 43300929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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