View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_84 (Length: 228)
Name: NF1858_low_84
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_84 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 34721179 - 34720967
Alignment:
| Q |
1 |
tgttgttgatgccggcgatttgcttggtaccggccgagaataaggaacaggagatggttttggaactattctcttcgctctgccagttacacgtctgtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34721179 |
tgttgttgatgccggcgatttgcttggtaccggccgagaataaggaacaggagatggttttggaactattctcttcgctctgccagttacacgtctgtta |
34721080 |
T |
|
| Q |
101 |
tccatccacagacacacaaagatgacaacaaaagttaatcactttaaataatgtcacttgaaagaaaaagttgcattgtttcatagaaaaagtatatata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34721079 |
tccatccacagacacacaaagatgacaacaaaagttaatcactttaaataatgtcacttgaaagaaaaagttgcattgtttcatagaaaaagtatagata |
34720980 |
T |
|
| Q |
201 |
ttatcaatattat |
213 |
Q |
| |
|
||||||||||||| |
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| T |
34720979 |
ttatcaatattat |
34720967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 34697068 - 34697210
Alignment:
| Q |
32 |
ggccgagaataaggaacaggagatggttttggaactattctcttcgctctgccagttacacgtctgttatccatccacagacacacaaagatgacaacaa |
131 |
Q |
| |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||| |||||||||| || || || ||||||| |||||||||| |
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| T |
34697068 |
ggccgagagtaaggtacaggagatggttttggaactattctcttcgctcttcctgttacatgtctgttatcaattcatag--acacaaatatgacaacaa |
34697165 |
T |
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| Q |
132 |
aagttaatcactttaaataatgtcacttgaaagaaaaagttgcattgtt |
180 |
Q |
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||||||| ||| ||||| ||||||||||||||||||||||||||| |
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| T |
34697166 |
aagttaa----tttccataatatcacttgaaagaaaaagttgcattgtt |
34697210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 27014060 - 27013848
Alignment:
| Q |
1 |
tgttgttgatgccggcgatttgcttggtaccggccgagaataaggaacaggagatggttttggaactattctcttcgctctgccagttacacgtctgtta |
100 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27014060 |
tgttgttgatgctggcgaattgcttggtaccggccgagaataaggaacaggagatggttttggaactattctcttcgctctgccagttacacgtctgtta |
27013961 |
T |
|
| Q |
101 |
tccatccacagacacacaaagatgacaacaaaagttaatcactttaaataatgtcacttgaaagaaaaagttgcattgtttcatagaaaaagtatatata |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27013960 |
tccatccatagacacacaaagatgacaacaaaagttaatcactttaaataatgtcacttgaaagaaaaagttgcattgtttcatagaaaaagtatatata |
27013861 |
T |
|
| Q |
201 |
ttatcaatattat |
213 |
Q |
| |
|
||||||||||||| |
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|
| T |
27013860 |
ttatcaatattat |
27013848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 26994728 - 26994870
Alignment:
| Q |
32 |
ggccgagaataaggaacaggagatggttttggaactattctcttcgctctgccagttacacgtctgttatccatccacagacacacaaagatgacaacaa |
131 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||| |||||||||| || || || ||||||| |||||||||| |
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| T |
26994728 |
ggccgagagtaaggtacaggagatggttttggaactattctcttcgctcttcctgttacaagtctgttatcaattcatag--acacaaatatgacaacaa |
26994825 |
T |
|
| Q |
132 |
aagttaatcactttaaataatgtcacttgaaagaaaaagttgcattgtt |
180 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
26994826 |
aagttaa----tttccataatatcacttgaaagaaaaagttgcattgtt |
26994870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 32 - 190
Target Start/End: Complemental strand, 27073202 - 27073050
Alignment:
| Q |
32 |
ggccgagaataaggaacaggagatggttttggaactattctcttcgctctgccagttacacgtctgttatccatccacagacacacaaagatgacaa-ca |
130 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| | ||| ||||||| || || | |
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| T |
27073202 |
ggccaagagtaaggaacaggagatggttttggaactattctcttggctcttccggttacacgtctgttatccgt------acatacaaagaggagaagaa |
27073109 |
T |
|
| Q |
131 |
aaagttaatcactttaaataatgtcacttgaaagaaaaagttgcattgtttcatagaaaa |
190 |
Q |
| |
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||| |||||||| ||||| | ||||||||||||||||||||||||||||||| |||||| |
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| T |
27073108 |
aaatttaatcacattaaa-atagtcacttgaaagaaaaagttgcattgtttcaaagaaaa |
27073050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 181
Target Start/End: Complemental strand, 27065342 - 27065198
Alignment:
| Q |
32 |
ggccgagaataaggaacaggagatggttttggaactattctcttcgctctgccagttacacgtctgttatccatccacagacacacaaagatgacaacaa |
131 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| || ||||| || ||||| ||||||||||| | ||| ||||||| | || || |
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| T |
27065342 |
ggccgagagtaaggaacaggagatggttttggaactattctatttgctcttccgattacatgtctgttatccgt------acatacaaagagaagaagaa |
27065249 |
T |
|
| Q |
132 |
aag-ttaatcactttaaataatgtcacttgaaagaaaaagttgcattgttt |
181 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27065248 |
aaacttgatcactttaaataatgtcacttgaaagaaaaagttgcattgttt |
27065198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 27031749 - 27031820
Alignment:
| Q |
32 |
ggccgagaataaggaacaggagatggttttggaactattctcttcgctctgccagttacacgtctgttatcc |
103 |
Q |
| |
|
|||||||| ||||| |||||||||||| ||||||||||| |||| ||||| || | |||||||||||||||| |
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|
| T |
27031749 |
ggccgagagtaagggacaggagatggtgttggaactattttcttggctcttccgggtacacgtctgttatcc |
27031820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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