View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_85 (Length: 223)
Name: NF1858_low_85
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_85 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 15506181 - 15505991
Alignment:
| Q |
18 |
cttagaatgtcaaataacaaagtcacagtgttcagctacgacgcatacaaaattacaattactaataaattcataacattcataggttgtcacataaatt |
117 |
Q |
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| T |
15506181 |
cttagaatgtcaaataacaaagtcacagtgttcagctacgacgcatacaaaattacaattactaataaattcataacattcatagattgtcacataaatt |
15506082 |
T |
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| Q |
118 |
gtcaaaattttgatgttcaaatatgattgctctttgcacattcacacatagggcgaggtactattgctaccaaagggagatggcgtctgtg |
208 |
Q |
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| T |
15506081 |
gtcaaaattttgatgttcaaatatgattgctctttgcagattcacacacagggcgaggtactattgctaccaaagggagacggcgtctgtg |
15505991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 35554438 - 35554388
Alignment:
| Q |
99 |
ataggttgtcacataaattgtcaaaattttgatgttcaaatatgattgctc |
149 |
Q |
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| T |
35554438 |
atagattgtcacataaattgtcgaaattttgatgttcaaatatcattgctc |
35554388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 13702363 - 13702401
Alignment:
| Q |
103 |
gttgtcacataaattgtcaaaattttgatgttcaaatat |
141 |
Q |
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| T |
13702363 |
gttgtcacataagttgtcaaaattttgatgttcaaatat |
13702401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 134
Target Start/End: Complemental strand, 32692661 - 32692626
Alignment:
| Q |
99 |
ataggttgtcacataaattgtcaaaattttgatgtt |
134 |
Q |
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| T |
32692661 |
ataggttgtcacataaattatcaaaattttgatgtt |
32692626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 32692749 - 32692786
Alignment:
| Q |
104 |
ttgtcacataaattgtcaaaattttgatgttcaaatat |
141 |
Q |
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| T |
32692749 |
ttgtcatataaattgtcaaaattttaatgttcaaatat |
32692786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 37814838 - 37814875
Alignment:
| Q |
99 |
ataggttgtcacataaattgtcaaaattttgatgttca |
136 |
Q |
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| T |
37814838 |
ataggttgtcacataaattagcaaaattttgatgttca |
37814875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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