View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_89 (Length: 205)
Name: NF1858_low_89
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_89 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 6e-76; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 1906113 - 1906300
Alignment:
| Q |
8 |
ttagcaaaatctttgaaggtctaatgcgagtaaagttgacagagtc-gagacttttttgaaatattcataaagtcaggggcatatttgagagcgacctac |
106 |
Q |
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| T |
1906113 |
ttagcatattctttgaaggactaatgtgagtaaatttgacagagtcagagacttttttgaaatattcataaagtcagggacgtatttgagagcgacctac |
1906212 |
T |
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| Q |
107 |
aaaatcaaagactaatttgatggtttactcggtcttttagtgtgtctcatgtttttgaaatttttggtactgttatgcaggtgttcat |
194 |
Q |
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| T |
1906213 |
aaaatcaaagactaatttgatggtttactcggtcttttagtgtgtctcatgttttggaattttttggtactgttatgcaggtgttcat |
1906300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 1896281 - 1896385
Alignment:
| Q |
35 |
gagtaaagttgacagagtcgaga--cttttttgaaatattcataaagtcaggggcatatttgagagcgacctacaaaatcaaagactaatttgatggttt |
132 |
Q |
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| T |
1896281 |
gagtaaatttaacagagtcgagagacttttttgaaatattcataaagtcaaagatgtatttgaaagcgacctataaaatcaaggtctaacttgaaggttt |
1896380 |
T |
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| Q |
133 |
actcg |
137 |
Q |
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| T |
1896381 |
actcg |
1896385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 53797307 - 53797383
Alignment:
| Q |
60 |
tttttgaaatattcataaagtcaggggcatatttgagagcgacctacaaaatcaaagactaatttgatggtttactc |
136 |
Q |
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| T |
53797307 |
tttttaaaatattcataaagtcaatgacctatttgagagtgaactacaaaatcaaagattaatttgatagtttactc |
53797383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 14748336 - 14748416
Alignment:
| Q |
60 |
tttttgaaatattcataaagtcaggggcatatttgagagcgacctacaaaatcaaagactaatttgatggtttactcggtc |
140 |
Q |
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| T |
14748336 |
tttttgaaatattcataaagtcaaggacctatttaagagtgtcctgcaatgtcaaggactaatttggtggtttactcggtc |
14748416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 10028902 - 10028976
Alignment:
| Q |
62 |
tttgaaatattcataaagtcaggggcatatttgagagcgacctacaaaatcaaagactaatttgatggtttactc |
136 |
Q |
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| T |
10028902 |
tttgaaatattaataaagtcaaagactaatttgagagtgacctacaaagacaaagactaatttggtggtctactc |
10028976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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