View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_9 (Length: 512)
Name: NF1858_low_9
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 241 - 444
Target Start/End: Original strand, 39988265 - 39988469
Alignment:
| Q |
241 |
ggtaaagatgaaaataatgatgaagaagatgaacaatttgtgaaggattttttgaaattgactttattcatatgtttacgttnnnnnnn-gtgtttttga |
339 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
39988265 |
ggtaaagatgaaaataatgatgaagaagatgaacaatttgtgaaggattttctgaaattgactttattcatatgtttacgttaaaaaaaagtgtttttga |
39988364 |
T |
|
| Q |
340 |
tgtttatgtagttttgctgtttctcgtgaggttgaagatgatatggaaaaatatatggtgtgggtagatcatcttaaaagttgtgtgtgtctttaatcta |
439 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
39988365 |
tgtttatgtagttttgctgtttcttgtgaggttgaagatgatatgaaaaaatatacggtgtgggtagaccatcttaaaagttgtgtgcgtctttaatcta |
39988464 |
T |
|
| Q |
440 |
ttggt |
444 |
Q |
| |
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||||| |
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| T |
39988465 |
ttggt |
39988469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 241 - 444
Target Start/End: Complemental strand, 3820671 - 3820451
Alignment:
| Q |
241 |
ggtaaagatgaaaataatgatgaagaagatgaacaatttgtgaaggattttttgaaattgactttattcatatgtttacgttnnnnnnn--gtgtttttg |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
3820671 |
ggtaaagatgaaaataatgatgaagaagatgaacaatttgcgaaggattttctgaaattgactttattcatatgtttacgttaaaaaaaaagtgtttttg |
3820572 |
T |
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| Q |
339 |
atgtttatgt---------------agttttgctgtttctcgtgaggttgaagatgatatggaaaaatatatggtgtgggtagatcatcttaaaagttgt |
423 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
3820571 |
atgtttatgtggtagatgtttatgtagttttgctgtttctcgtgaggttgaagatgatatggaaaaatatatggtgtgggtagaccatcttaaaagttat |
3820472 |
T |
|
| Q |
424 |
gtgtgtctttaatctattggt |
444 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
3820471 |
gtgcgtctttaatctattggt |
3820451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 3820906 - 3820789
Alignment:
| Q |
8 |
agatgaaaatgaaggaaatgagataatgatgagttaattccagtagctttatgagttttatttcggttaaaagagataaacgaaaatgaaggaaatggaa |
107 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
3820906 |
agatgaaagtgaaggaaatgagataatgatgagttaattccggtagctttatgagttttatttcggttaaaagatataaatgaaaatgaaggaaatggaa |
3820807 |
T |
|
| Q |
108 |
atggccaatccagaggcg |
125 |
Q |
| |
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|||||||||| ||||||| |
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| T |
3820806 |
atggccaatcgagaggcg |
3820789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 39988057 - 39988147
Alignment:
| Q |
35 |
gatgagttaattccagtagctttatgagttttatttcggttaaaagagataaacgaaaatgaaggaaatggaaatggccaatccagaggcg |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39988057 |
gatgagttaattccagtagctttatgagttttatttcggttaaaagagataaatgaaaatgaaggaaatggaaatggccaatccagaggcg |
39988147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 6e-66; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 241 - 444
Target Start/End: Original strand, 39656687 - 39656905
Alignment:
| Q |
241 |
ggtaaagatgaaaataatgatgaagaagatgaacaatttgtgaaggattttttgaaattgactttattcatatgtttacgttnnnnnnngtgtttttgat |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39656687 |
ggtaaagatgaaaataatgatgaagaagatgaacaatttgcgaaggattttctgaaattgactttattcatatgtttacgttaaaaaaagtgtttttgat |
39656786 |
T |
|
| Q |
341 |
g---------------tttatgtagttttgctgtttctcgtgaggttgaagatgatatggaaaaatatatggtgtgggtagatcatcttaaaagttgtgt |
425 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
39656787 |
gtttatgtggtagatgtttatgtagttttgctgtttctcgtgaggttgaagatgatatggaaaaatatatggtgtgggtagaccatcttaaaagttatgt |
39656886 |
T |
|
| Q |
426 |
gtgtctttaatctattggt |
444 |
Q |
| |
|
| ||||||||||||||||| |
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| T |
39656887 |
gcgtctttaatctattggt |
39656905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 39656442 - 39656559
Alignment:
| Q |
8 |
agatgaaaatgaaggaaatgagataatgatgagttaattccagtagctttatgagttttatttcggttaaaagagataaacgaaaatgaaggaaatggaa |
107 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
39656442 |
agatgaaagtgaaggaaatgagataatgatgagttaattccggtagctttatgagttttatttcggttaaaagatataaatgaaaatgaaggaaatggaa |
39656541 |
T |
|
| Q |
108 |
atggccaatccagaggcg |
125 |
Q |
| |
|
|||||||||| ||||||| |
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| T |
39656542 |
atggccaatcgagaggcg |
39656559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 338 - 490
Target Start/End: Original strand, 34365146 - 34365301
Alignment:
| Q |
338 |
gatgtttatgtagttttgctgtttctcgtgaggttgaagatgatatggaaaaatatatggtgtgggtagatcatcttaaaagttgtgtgtgtctttaatc |
437 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |||||||||||||||| |||||||||| |
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| T |
34365146 |
gatgtttatgtagttttgctgtttctcgtgaggttgaagatgatatgaaaaaatatatgatgtgggtagaccgtcttaaaagttgtgtgcgtctttaatc |
34365245 |
T |
|
| Q |
438 |
tattggtnnnnnnnnn---ctttcttataatgagaaactctttcccctacctaccc |
490 |
Q |
| |
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||||||| ||||| |||||||| |||||||||||||||||||||| |
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| T |
34365246 |
tattggtaaaaaaaaaaaactttcctataatgaaaaactctttcccctacctaccc |
34365301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 287 - 444
Target Start/End: Original strand, 34365080 - 34365252
Alignment:
| Q |
287 |
attttttgaaattgactttattcatatgtttacgttnnnnnnngtgttttt---------------gatgtttatgtagttttgctgtttctcgtgaggt |
371 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34365080 |
attttctgaaattgactttattcatatgtttacgttaaaaaaagtgtttttgatatttatgtggtagatgtttatgtagttttgctgtttctcgtgaggt |
34365179 |
T |
|
| Q |
372 |
tgaagatgatatggaaaaatatatggtgtgggtagatcatcttaaaagttgtgtgtgtctttaatctattggt |
444 |
Q |
| |
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||||||||||||| ||||||||||| |||||||||| | |||||||||||||||| ||||||||||||||||| |
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|
| T |
34365180 |
tgaagatgatatgaaaaaatatatgatgtgggtagaccgtcttaaaagttgtgtgcgtctttaatctattggt |
34365252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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