View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1858_low_90 (Length: 204)
Name: NF1858_low_90
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_90 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 34760714 - 34760544
Alignment:
| Q |
20 |
atgctcccatgaacttatttgagagcgtcatacaaagtcgtagacgaatttgatggtttactcggtagaaaactagtattactctaacatatagtataag |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34760714 |
atgctccgatgaacttatttgagagcgtcatacaaagtcgtagacgaatttggtggtttacccagtagaaaactagtattactctaacatatagtataag |
34760615 |
T |
|
| Q |
120 |
tattcatatttggtgtaccaaaatctaatacttctcaccctatctaatgttattattcttaagaacctatg |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34760614 |
tattcatatttggtgtaccaaaatctaatacttctcaccctatctaatgttattattcttaagaacctatg |
34760544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 34748171 - 34748038
Alignment:
| Q |
61 |
agacgaatttgatggtttactcggtagaaaactagtattactctaacatatagt-----ataagtattcatatttggtgtaccaaaatctaatacttctc |
155 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||||||||||| ||||||| | ||||| |||||||||||| ||||||||| ||||| || |
|
|
| T |
34748171 |
agacggatttggtggtttactcactagaaaactagtattactctaaaatatagtaataaaaaagtactcatatttggtgaaccaaaatcgaatacccttc |
34748072 |
T |
|
| Q |
156 |
accctatctaatgttattattcttaagaacctat |
189 |
Q |
| |
|
||||||| |||| |||||||||||||| ||||| |
|
|
| T |
34748071 |
accctatttaatactattattcttaagagcctat |
34748038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 595891 - 595923
Alignment:
| Q |
50 |
tacaaagtcgtagacgaatttgatggtttactc |
82 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
595891 |
tacaaagtcggagacgaatttgatggtttactc |
595923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University