View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18590_high_4 (Length: 245)
Name: NF18590_high_4
Description: NF18590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18590_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 7750675 - 7750903
Alignment:
| Q |
1 |
tgactctaccatctttaccaacaaatatgtcattacaacttttcgatacagctctaaattctcttaacaatttcaagactccaatttcacaatcaccact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7750675 |
tgactctaccatctttaccaacaaatatgtcattacaacttttcgatacagctctaaattctcttaacaatttcaagactccaatttcacaatcaccact |
7750774 |
T |
|
| Q |
101 |
agtaaatttgttaagtgccaatctatccttttgatcagcaagaaactctaggttctgtatcaatgcttcaatcctatcttcaaatcctcgcttaataaaa |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7750775 |
agtaaatttgttaagtcccaatctatccttttgatcagcaagaaactctaggttctgtatcaatgcttcaatcctatcttcaaatcctcgcttaataaaa |
7750874 |
T |
|
| Q |
201 |
agtgaaagatagcgtcacatctttccctt |
229 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
7750875 |
agtgaaagatagcgtcgcatctttccctt |
7750903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 6590695 - 6590577
Alignment:
| Q |
111 |
ttaagtgccaatctatccttttgatcagcaagaaactctaggttctgtatcaatgcttcaatcctatcttcaaatcctcgcttaataaaaagtgaaagat |
210 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
6590695 |
ttaagtcccaatttatccttttgatctgcaagaaactctaggttctgtatcaatgctttaatcctagcttcaaatcctcgattaataaaacgtgaaagaa |
6590596 |
T |
|
| Q |
211 |
agcgtcacatctttccctt |
229 |
Q |
| |
|
|||||| ||||| ||||| |
|
|
| T |
6590595 |
agcgtcgtatcttgccctt |
6590577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 6917808 - 6917904
Alignment:
| Q |
113 |
aagtgccaatctatccttttgatcagcaagaaactctaggttctgtatcaatgcttcaatcctatcttcaaatcctcgcttaataaaaagtgaaaga |
209 |
Q |
| |
|
|||| |||||||||||| || || ||||||||||||| |||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||| |
|
|
| T |
6917808 |
aagtcccaatctatcctgtttctctgcaagaaactctaccttctgtatcaatgcttcaatcctagcctcaaatcctcgattactaaaaagtgaaaga |
6917904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University