View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18590_low_1 (Length: 523)
Name: NF18590_low_1
Description: NF18590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18590_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 168 - 507
Target Start/End: Complemental strand, 6980125 - 6979786
Alignment:
| Q |
168 |
gtgtatgtgttgtggttgtctactaacaagagcttgccttcaagataagggtgtgcgatgttctacaagttgggttagttgtgattctactcatgaagac |
267 |
Q |
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| T |
6980125 |
gtgtatgtgttgtggttgtctactaacaagagcttgccttcaagataagggtgtgcggtgttctacaagttgggttagttgtgattctactcatgaagac |
6980026 |
T |
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| Q |
268 |
ttgacacatgtaattttttattgcccttttgctacacaagttgatgaatgaccgaattatgtgacgacattcataaagttgttcacactactacttcggc |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
6980025 |
ttgacacatgtaattttttattgcccttttgctacacaagttgatgaatgaccaaattatgggacgacattcataaagttgttcacactactacttcgac |
6979926 |
T |
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| Q |
368 |
atcagaagccatcttttattactacaacaactcacgtcggacctctaccaacatatgactaccattttttggagtatttggaagaacatgaatcttaaat |
467 |
Q |
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| T |
6979925 |
atcagaagccatcttttattactacaacaactcacgtcggacctctaccaacagatgactaccattttttggagtatttggaagaacatgaatcttaaat |
6979826 |
T |
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| Q |
468 |
tatgggaagatgttagtgagctatgcgcacaagtggtata |
507 |
Q |
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| T |
6979825 |
tatgggaagatgttagtgagctatgcgcacaagtggtata |
6979786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 6980507 - 6980345
Alignment:
| Q |
11 |
atcatcataaagtaataaatggaattgagatattagcactaataaa---tatgacttttggcaaaactaaatacggaataggaaatttattgaatttgac |
107 |
Q |
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| T |
6980507 |
atcatcataaagtaataaatggaattgagatattagcactaataaatactatgacttttgacaaaactaaatagagaatacgaaacttattgaatttgac |
6980408 |
T |
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| Q |
108 |
tgatgcctgnnnnnnngactgatttaggggtattttgtcactaaatgttagttatccaatgtg |
170 |
Q |
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| T |
6980407 |
tgaggccggaaaaaaagactgatttagaggtattttatcactaaatgttagttatccaatgtg |
6980345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 256 - 409
Target Start/End: Original strand, 9282927 - 9283082
Alignment:
| Q |
256 |
actcatgaagacttgacacatgtaattttttattgcccttttgctacacaagttga-tgaatgaccgaattatgtgacgacattcataaagttgttcaca |
354 |
Q |
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| T |
9282927 |
actcatgaagacttggggcatgcaattttttattgccctttttctacacaagtttagtgagtgtctggaatatgggacaatattcataaagttgttcgca |
9283026 |
T |
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| Q |
355 |
ctactacttcggcatcagaagccatctt-ttattactacaacaactcacgtcggac |
409 |
Q |
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| T |
9283027 |
ctactacttcaacatcagaagcaatcttcttattactacaacaactcacgtcggac |
9283082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 434 - 505
Target Start/End: Original strand, 22956254 - 22956325
Alignment:
| Q |
434 |
ttttggagtatttggaagaacatgaatcttaaattatgggaagatgttagtgagctatgcgcacaagtggta |
505 |
Q |
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| T |
22956254 |
tttttgagtatttggaagcacatgaaccttaaatcatggcaagatgttaatgagctatgcacacaagtggta |
22956325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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