View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18591_high_10 (Length: 323)
Name: NF18591_high_10
Description: NF18591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18591_high_10 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 34042308 - 34042647
Alignment:
| Q |
7 |
acatcatcacaatataaaaacaatttagttcgcaattcacaaagttcaaaagctttccctccaattccgttaacaggaaataacagactagagagagaa- |
105 |
Q |
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| T |
34042308 |
acatcattacaatataaaaacaatttagttcgcaattcacaaagttcaaaagctttccctccaattccgttaacaggaaataacagactagagagagaaa |
34042407 |
T |
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| Q |
106 |
----------------agaaagagaaa------cccaaaaacactgtgcagattttccctctctttctattctcattttctctttcaacaatggatgatt |
183 |
Q |
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| T |
34042408 |
ctcggtaactaactagagagagagaaagagaaacccaaaaacactgtgcagattttccctctctttctattctaattttctctttcaacaatggatgatt |
34042507 |
T |
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| Q |
184 |
ccgaacctgaatttccgattcctactaggaaagaacttgaaatcataaagaactacttcaatgtcgaatccgaattcatcgccgcaacagacaccttcac |
283 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042508 |
ccgaacctgaatttccaattcctactaggaaagaacttgaaatcataaagaactacttcaatgtcgaatccgaattcatcgccgcaacagacaccttcac |
34042607 |
T |
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| Q |
284 |
aacccctcatgacatcctttttcgcaatcttgctgtttct |
323 |
Q |
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| T |
34042608 |
aacccctcatgacattctttttcgcaatcttgctgtttct |
34042647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 172 - 323
Target Start/End: Complemental strand, 4046652 - 4046501
Alignment:
| Q |
172 |
caatggatgattccgaacctgaatttccgattcctactaggaaagaacttgaaatcataaagaactacttcaatgtcgaatccgaattcatcgccgcaac |
271 |
Q |
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| T |
4046652 |
caatggatgattccgaacctgaatttcaagttcctgccagaaaagaacttgatatcataaagaactacttcaatgtcgaatccgagttcatcgccgcagc |
4046553 |
T |
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| Q |
272 |
agacaccttcacaacccctcatgacatcctttttcgcaatcttgctgtttct |
323 |
Q |
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| T |
4046552 |
agacttcttcacaagctttcgtgacattctttttcgcaatcttgctgtttct |
4046501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 4046766 - 4046718
Alignment:
| Q |
54 |
aaaagctttccctccaattccgttaacaggaaataacagactagagaga |
102 |
Q |
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| T |
4046766 |
aaaagctttccctccaattccgttaacatgaaataacagactagagaga |
4046718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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