View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18591_high_11 (Length: 321)
Name: NF18591_high_11
Description: NF18591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18591_high_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 3 - 321
Target Start/End: Complemental strand, 38924403 - 38924085
Alignment:
| Q |
3 |
tcgttgtcagagtcgaaaactccagctgcaatgcttgcttcaattcctaaaccaacgcatatttgaaaagtgaaaagaagaatccatttccatgacatgt |
102 |
Q |
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| T |
38924403 |
tcgttgtcggagtcgaaaactccagctgcaatgcttgcttcaattcctaaaccaacacatatttgaaaagtgaaaagaagaatccatttccatgacatgt |
38924304 |
T |
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| Q |
103 |
aaagacgagtttggagaagaatagaattggatgaatcattcataaggttgatttttcccatcaaaccattgatcaaagtagctacacttacaatggagac |
202 |
Q |
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| T |
38924303 |
aaagacgagtttggagaagaatagaattggatgaatcattcataaggttgatttttcccatcaaaccattgatcaaagtagctacacttacaatggagac |
38924204 |
T |
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| Q |
203 |
aagaacgtagagaatacatggggaggtgtgtatagcaaaagagaaaagataaggtaagggttgttgtgaatgaatttgaaggtagaattttgcaccagag |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38924203 |
aagaacgtagagaatacatggggaggtgtgtatagcaaaagagaaaagataaggtaagggttgttgtgaatgaatttgaaggtagaattttgcaccagag |
38924104 |
T |
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| Q |
303 |
agactagctaagagaagaa |
321 |
Q |
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| T |
38924103 |
agactagctaagagaagaa |
38924085 |
T |
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