View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18591_high_12 (Length: 295)
Name: NF18591_high_12
Description: NF18591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18591_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 41 - 283
Target Start/End: Original strand, 23908731 - 23908973
Alignment:
| Q |
41 |
ttaatcaagtagataaggaaggaatcattaccgtctcgagaaaagaagacttatggaacgcgctgctattaagttgacaataagagacggaaaagagacg |
140 |
Q |
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| T |
23908731 |
ttaattaagtagataaggaaggaatcattaccgtctcgagaaaagaagcattatggaacgcgctgctattaagttgacaataagagacggaaaagagatg |
23908830 |
T |
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| Q |
141 |
aaaggaagtaatatcagttgttgaatgataaaaaacatatagtttgtctggccctcagctgcatgtctagcaacagtatgtccaacctaattatcaagct |
240 |
Q |
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| T |
23908831 |
aaaggaagtaatatcaattgttggatgataaaaaacatatagtctgtctggtcctcagctgcatgtctagcaacagtatgtccaacctaattatcaagct |
23908930 |
T |
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| Q |
241 |
gaaaaatgttagatttatgtcttaaatatattaaaatgcagaa |
283 |
Q |
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| T |
23908931 |
gaaaaatgttagatttatgtcttaaatatattaaaatgcagaa |
23908973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 23908580 - 23908708
Alignment:
| Q |
1 |
tacggatgaaaatgcccagatcagattattggaaaccattttaatcaagtagataaggaaggaatcattaccgtctcgagaaaagaagacttatggaacg |
100 |
Q |
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| T |
23908580 |
tacggatgaaaattcccagatcagattatttgaaaccattttaatcaagtagataaggaaggaatcattaccgtctcgagaaaagaagcattatggaacg |
23908679 |
T |
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| Q |
101 |
cgctgctattaagttgacaataagagacg |
129 |
Q |
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| T |
23908680 |
cgctgctattaagttgacaataagagacg |
23908708 |
T |
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