View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18591_high_18 (Length: 237)

Name: NF18591_high_18
Description: NF18591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18591_high_18
NF18591_high_18
[»] chr1 (3 HSPs)
chr1 (45-233)||(39202020-39202209)
chr1 (141-229)||(1049028-1049116)
chr1 (141-212)||(14592111-14592182)
[»] chr8 (11 HSPs)
chr8 (128-217)||(8747792-8747881)
chr8 (140-237)||(30202714-30202811)
chr8 (45-229)||(4679868-4680052)
chr8 (139-229)||(13903806-13903896)
chr8 (141-230)||(26724735-26724824)
chr8 (141-230)||(30203289-30203378)
chr8 (43-103)||(8747711-8747772)
chr8 (45-95)||(13903941-13903991)
chr8 (141-228)||(28155307-28155394)
chr8 (141-230)||(16220793-16220882)
chr8 (141-230)||(39566086-39566175)
[»] chr2 (4 HSPs)
chr2 (128-233)||(21195932-21196037)
chr2 (141-230)||(3601757-3601846)
chr2 (141-213)||(13481424-13481496)
chr2 (53-97)||(21195856-21195900)
[»] chr6 (6 HSPs)
chr6 (128-230)||(7465723-7465825)
chr6 (197-237)||(16866361-16866401)
chr6 (45-97)||(7465639-7465691)
chr6 (142-230)||(24167283-24167371)
chr6 (45-97)||(21453642-21453694)
chr6 (140-200)||(21453538-21453598)
[»] chr3 (3 HSPs)
chr3 (139-233)||(8706346-8706440)
chr3 (139-233)||(9058233-9058327)
chr3 (141-230)||(30675615-30675704)
[»] chr7 (4 HSPs)
chr7 (128-229)||(38477671-38477772)
chr7 (141-230)||(29272724-29272813)
chr7 (45-87)||(38477815-38477857)
chr7 (141-230)||(22491758-22491847)
[»] chr4 (4 HSPs)
chr4 (141-230)||(5385715-5385804)
chr4 (141-226)||(48706865-48706950)
chr4 (141-216)||(54801661-54801736)
chr4 (148-230)||(5788008-5788090)
[»] scaffold0294 (1 HSPs)
scaffold0294 (141-211)||(2106-2176)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 45 - 233
Target Start/End: Original strand, 39202020 - 39202209
Alignment:
Q  45 ataagtaaatacatatcaatttattatgtgggtagttatgtaatttactaaatttaatannnnnnnnnnnnnnnnnnnn-atccttctttcctacctctt 143  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||                     ||| ||||||||||||||||    
T  39202020 ataagtaaatacatatcaatttaatatgtgggtagttatgtaatttactaaatctaatatttttttattttttattttttatctttctttcctacctctt 39202119  T
Q  144 tctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttccttcta 233  Q
    |||||||||||||||||||| ||||||| ||| | ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  39202120 tctcttgtaccaaacaactaataaaatcatcttactttctactctcattctttccttacacaatctttcctttaactttctttccttcta 39202209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 1049028 - 1049116
Alignment:
Q  141 ctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttcct 229  Q
    ||||||||| ||||||||||| |  | |||| | ||| ||||||||||| ||| || |||||||||||||||||||  | |||||||||    
T  1049028 ctttctcttctaccaaacaaccataacaatcatttcactttctactctctttcatttcttacacaatctttcctttctctttctttcct 1049116  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 14592111 - 14592182
Alignment:
Q  141 ctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttc 212  Q
    ||||||||||||||||||||| |  | ||||| || | ||||||||||| ||| ||||||| ||||||||||    
T  14592111 ctttctcttgtaccaaacaaccaaaacaatccgcttactttctactctctttctttccttagacaatctttc 14592182  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 8747792 - 8747881
Alignment:
Q  128 ttctttcctacctctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttccttta 217  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||| || || |||||||||||||||||||||||||||||||||||||||    
T  8747792 ttctttcctacttctttctcttataccaaacaacaagtaaaatcatcccactttctactctcattccttccttacacaatctttccttta 8747881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 30202714 - 30202811
Alignment:
Q  140 tctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttccttctatttt 237  Q
    ||||||| || ||||||||||||| ||||||| ||||  |||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  30202714 tctttcttttataccaaacaactaataaaatcatctctctttctactctcattccttcctttcacaatctttccttttactttctttccttctatttt 30202811  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 45 - 229
Target Start/End: Original strand, 4679868 - 4680052
Alignment:
Q  45 ataagtaaatacatatcaatttattatgtgggtagttatgtaatttactaaatttaatannnnnnnnnnnnnnnnnnnnatccttctttcctacctcttt 144  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |                    ||| |||||||||  ||||||    
T  4679868 ataagtaaatacatatcaatttaatatgtggatagttatgtaatttactaaatctaacattttttattttaatttttttatctttctttcctttctcttt 4679967  T
Q  145 ctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttcct 229  Q
    ||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||| | ||||||||||  ||| || |||||||||    
T  4679968 ctcttataccaaacaactaataaaatcatctcactttctactctcattccttccgttcacaatcttttttttcactttctttcct 4680052  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 13903896 - 13903806
Alignment:
Q  139 ctctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttcct 229  Q
    ||||||||||| ||||||||||||| || |||| ||||| |||||||||||||| ||||||  ||||||||||||||| || |||||||||    
T  13903896 ctctttctcttataccaaacaactaatacaatcatctcactttctactctcatttcttcctatcacaatctttccttttactttctttcct 13903806  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 26724735 - 26724824
Alignment:
Q  141 ctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttcctt 230  Q
    ||||||||| ||||||||||| |  | |||| ||||| ||||||||||| ||| ||||||||||||||||||||||  | ||||||||||    
T  26724735 ctttctcttttaccaaacaaccataacaatcatctcactttctactctctttcattccttacacaatctttcctttctctttctttcctt 26724824  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 30203289 - 30203378
Alignment:
Q  141 ctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttcctt 230  Q
    ||||||||| ||||||||||| |  | |||| ||||| ||||||||||| ||| ||||||||||||||||||||||  | ||||||||||    
T  30203289 ctttctcttttaccaaacaaccataacaatcatctcactttctactctctttcattccttacacaatctttcctttctctttctttcctt 30203378  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 8747711 - 8747772
Alignment:
Q  43 tcataagtaaatacatatcaa-tttattatgtgggtagttatgtaatttactaaatttaata 103  Q
    ||||||||||||||||||||| |||||||| ||| || |||||||||||||||||| |||||    
T  8747711 tcataagtaaatacatatcaaatttattatatggataattatgtaatttactaaatctaata 8747772  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 13903991 - 13903941
Alignment:
Q  45 ataagtaaatacatatcaatttattatgtgggtagttatgtaatttactaa 95  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||| |||||||    
T  13903991 ataagtaaaaacatatcaatttaatatatgggtagttatgtaacttactaa 13903941  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 28155307 - 28155394
Alignment:
Q  141 ctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttcc 228  Q
    ||||||||| |||||||||||||  || ||| ||||| |||||||| |||||| ||||||| ||  || ||||||| || ||||||||    
T  28155307 ctttctcttataccaaacaactaaaaagatcttctcactttctactatcattctttccttatactttcattccttttactttctttcc 28155394  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 16220793 - 16220882
Alignment:
Q  141 ctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttcctt 230  Q
    ||||||||| ||||||||| | |  | |||||| ||| ||||||||||  ||| ||||||| ||||||||||||||  | ||||||||||    
T  16220793 ctttctcttataccaaacatccaaaacaatcctttcactttctactctttttctttccttatacaatctttcctttctctttctttcctt 16220882  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 39566086 - 39566175
Alignment:
Q  141 ctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttcctt 230  Q
    ||||||| ||||||||||||| |  | |||||||||| ||||||||||  ||| ||||||| ||||| ||||| ||   |||||||||||    
T  39566086 ctttctcgtgtaccaaacaaccaaaacaatcctctcactttctactctttttctttccttagacaatatttcccttcttgttctttcctt 39566175  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 21195932 - 21196037
Alignment:
Q  128 ttctttcctacctctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttc 227  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||| |||||||||||||||  | ||| |||    
T  21195932 ttctttccttcctctttctcttataccaaacaactaataaaatcatctcactttctactctcattccttcctttcacaatctttcctttccctttcgttc 21196031  T
Q  228 cttcta 233  Q
    ||||||    
T  21196032 cttcta 21196037  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 3601846 - 3601757
Alignment:
Q  141 ctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttcctt 230  Q
    |||||| ||||| |||||||| |  | |||||||||| ||||||||||  ||| ||||||| ||||||||||||||  | ||||||||||    
T  3601846 ctttcttttgtatcaaacaaccaaaacaatcctctcactttctactctttttctttccttaaacaatctttcctttcccattctttcctt 3601757  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 13481496 - 13481424
Alignment:
Q  141 ctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcc 213  Q
    ||||| ||||||||||||||| |  | |||||||||| ||||||||||  ||| ||||||| |||||||||||    
T  13481496 ctttcccttgtaccaaacaaccaaaacaatcctctcactttctactctttttctttccttagacaatctttcc 13481424  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 21195856 - 21195900
Alignment:
Q  53 atacatatcaatttattatgtgggtagttatgtaatttactaaat 97  Q
    |||||||| ||||||  ||||||||||||||||||||||||||||    
T  21195856 atacatattaatttaacatgtgggtagttatgtaatttactaaat 21195900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 230
Target Start/End: Original strand, 7465723 - 7465825
Alignment:
Q  128 ttctttcctacctctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttc 227  Q
    ||||||||  ||| |||||||| ||||||||||||| ||||||| | ||| |||||||||||||||||||||| |||||||||||||||  | |||||||    
T  7465723 ttctttccctcctttttctcttataccaaacaactaataaaatcatttcactttctactctcattccttcctttcacaatctttccttttcctttctttc 7465822  T
Q  228 ctt 230  Q
    |||    
T  7465823 ctt 7465825  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 16866361 - 16866401
Alignment:
Q  197 ccttacacaatctttcctttaacgttctttccttctatttt 237  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  16866361 ccttacacaatctttcctttaacgttctttccttctatttt 16866401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 7465639 - 7465691
Alignment:
Q  45 ataagtaaatacatatcaatttattatgtgggtagttatgtaatttactaaat 97  Q
    ||||||| |||||||| ||||||  ||||||||||||||||||||||||||||    
T  7465639 ataagtatatacatattaatttaacatgtgggtagttatgtaatttactaaat 7465691  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 24167283 - 24167371
Alignment:
Q  142 tttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttcctt 230  Q
    |||||||||||||||||||| |  | |||| ||| | ||||||||||| ||| ||||||| ||||||||||||||  | ||||||||||    
T  24167283 tttctcttgtaccaaacaaccaaaataatcatcttactttctactctctttctttccttagacaatctttcctttctcattctttcctt 24167371  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 21453694 - 21453642
Alignment:
Q  45 ataagtaaatacatatcaatttattatgtgggtagttatgtaatttactaaat 97  Q
    ||||||||||||||||  ||||| |  ||||||||||||||||||||||||||    
T  21453694 ataagtaaatacatattgatttaatgcgtgggtagttatgtaatttactaaat 21453642  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 21453598 - 21453538
Alignment:
Q  140 tctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttcctt 200  Q
    ||||||| || || |||| ||||| ||||||| ||||  ||||||||||||||||||||||    
T  21453598 tctttcttttatatcaaataactaataaaatcatctctctttctactctcattccttcctt 21453538  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 8706440 - 8706346
Alignment:
Q  139 ctctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttccttcta 233  Q
    ||||||||| | |||||||||| || ||||||| ||||| |||||||||||||| ||||||| ||||||||||||||| || |||||||||||||    
T  8706440 ctctttctcctataccaaacaattaataaaatcatctcactttctactctcatttcttcctttcacaatctttcctttcactttctttccttcta 8706346  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 9058327 - 9058233
Alignment:
Q  139 ctctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttccttcta 233  Q
    ||||||||| | |||||||||| || ||||||| ||||| |||||||||||||| ||||||| ||||||||||||||| || |||||||||||||    
T  9058327 ctctttctcctataccaaacaattaataaaatcatctcactttctactctcatttcttcctttcacaatctttcctttcactttctttccttcta 9058233  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 30675704 - 30675615
Alignment:
Q  141 ctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttcctt 230  Q
    ||||| ||||||||||||||| |  | |||||||||| ||||||||||  ||| |||||||  |||||||||| ||   |||||||||||    
T  30675704 ctttcccttgtaccaaacaaccaaaacaatcctctcactttctactctttttctttccttaggcaatctttcccttcttgttctttcctt 30675615  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 38477772 - 38477671
Alignment:
Q  128 ttctttcctacctctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttc 227  Q
    |||||| || ||||||| |||| ||||||||||||| || |||| ||||| |||||||||||||||||||||  ||||||||||||||| |  |||||||    
T  38477772 ttcttttcttcctctttttcttataccaaacaactaatacaatcatctcactttctactctcattccttcctatcacaatctttccttttattttctttc 38477673  T
Q  228 ct 229  Q
    ||    
T  38477672 ct 38477671  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 29272813 - 29272724
Alignment:
Q  141 ctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttcctt 230  Q
    ||||||||||||||||||||| |  | ||||||||   ||| ||||||| ||| ||||||| ||||||||||||||   |||||||||||    
T  29272813 ctttctcttgtaccaaacaaccaaaacaatcctcttgctttttactctctttctttccttagacaatctttcctttcttgttctttcctt 29272724  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 38477857 - 38477815
Alignment:
Q  45 ataagtaaatacatatcaatttattatgtgggtagttatgtaa 87  Q
    ||||||||||||||||||||||| ||| | |||||||||||||    
T  38477857 ataagtaaatacatatcaatttaatatataggtagttatgtaa 38477815  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 22491758 - 22491847
Alignment:
Q  141 ctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttcctt 230  Q
    ||||||||||||||||||||| |  | |||||||| | ||||| ||||| ||  ||||||| |||||||||| |||  | ||||||||||    
T  22491758 ctttctcttgtaccaaacaaccaaaacaatcctcttactttctgctctctttttttccttagacaatctttcttttctcattctttcctt 22491847  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 5385804 - 5385715
Alignment:
Q  141 ctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttcctt 230  Q
    ||||||||| ||||||||||| |  | |||| ||||| ||||||||||| ||| ||||||||||||||||||||||  | ||||||||||    
T  5385804 ctttctcttctaccaaacaaccataacaatcatctcactttctactctctttcattccttacacaatctttcctttctctttctttcctt 5385715  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 48706950 - 48706865
Alignment:
Q  141 ctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttcttt 226  Q
    ||||||||||||||||||||| |  | |||||||||| ||||||||||   || ||||||| |||||||||||||| || ||||||    
T  48706950 ctttctcttgtaccaaacaaccaaaacaatcctctcactttctactctttctctttccttagacaatctttcctttcactttcttt 48706865  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 54801736 - 54801661
Alignment:
Q  141 ctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttccttt 216  Q
    ||||||||||||||||||||  |  | |||||||| | ||||||||||| ||| |||||| |||||||||||||||    
T  54801736 ctttctcttgtaccaaacaatcataacaatcctcttactttctactctctttctttccttgcacaatctttccttt 54801661  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 5788090 - 5788008
Alignment:
Q  148 ttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatctttcctttaacgttctttcctt 230  Q
    |||||||||||| |||  || ||| ||||| |||||||| |||||| ||||||| ||  || |||||||||| ||||||||||    
T  5788090 ttgtaccaaacacctaaaaagatcttctcactttctactatcattctttccttatactttcattcctttaactttctttcctt 5788008  T

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Target: scaffold0294 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 2176 - 2106
Alignment:
Q  141 ctttctcttgtaccaaacaactagtaaaatcctctcaatttctactctcattccttccttacacaatcttt 211  Q
    ||||| ||||||||||||||| |  | |||||||||| ||||||||||  ||| ||||||| |||||||||    
T  2176 ctttcccttgtaccaaacaaccaaaacaatcctctcactttctactctttttctttccttagacaatcttt 2106  T

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