View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18591_high_3 (Length: 489)
Name: NF18591_high_3
Description: NF18591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18591_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 50305036 - 50304935
Alignment:
| Q |
17 |
aaatattttgcttccactcttttcatatttaaaaataaacccttaaatattattcaggagcaaaacgcagacaaagtaagaaaaagtgtaagatccgcaa |
116 |
Q |
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| T |
50305036 |
aaatgttttgcttccattcttttcatatttaaaaataaacccttaaatattattcaggagcaaaacgcagacaaagtaagaaaaagtataagatccgcaa |
50304937 |
T |
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| Q |
117 |
ag |
118 |
Q |
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|| |
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| T |
50304936 |
ag |
50304935 |
T |
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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 11267452 - 11267401
Alignment:
| Q |
46 |
taaaaataaacccttaaatatt---attcaggagcaaaacgcagacaaagta |
94 |
Q |
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| T |
11267452 |
taaaaataaacccttaaatattaaaattcagaagcaaaatgcagacaaagta |
11267401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 29511364 - 29511438
Alignment:
| Q |
44 |
tttaaaaataaacccttaaatattattcaggagcaaaacgcagacaaagtaagaaaaagtgtaagatccgcaaag |
118 |
Q |
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| T |
29511364 |
tttaaaaataaacccttaaatattatttaggagcaaaacgcagacaaagtaagaaaaagtgtaagattcgcaaag |
29511438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 10690035 - 10690080
Alignment:
| Q |
160 |
tgaaagtaacttatgaacatatcctatgttatttccatgagctctt |
205 |
Q |
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| T |
10690035 |
tgaaaataacttatgaacatatcataagttatttacatgagctctt |
10690080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 15437998 - 15438047
Alignment:
| Q |
148 |
acggaaataagttgaaagtaacttatgaacatatcctatgttatttccat |
197 |
Q |
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||||||||||| |||||||||||||||||||| || || ||| ||||||| |
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| T |
15437998 |
acggaaataagctgaaagtaacttatgaacatgtcataagttgtttccat |
15438047 |
T |
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