View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18591_high_5 (Length: 449)
Name: NF18591_high_5
Description: NF18591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18591_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 445
Target Start/End: Complemental strand, 26056914 - 26056474
Alignment:
| Q |
17 |
gatagttcaatatcttgcagaaatagtcgtaaagactactctaatagaatcaactcaatagtcgtaaagcccccactgtgaatctccatagcagttgaaa |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26056914 |
gatagttcgatatcttgcagaaatagtcgtaaagactattctaatagaatcaactcaatagtcgtaaagcccccactgtgaatctccataacagttgaaa |
26056815 |
T |
|
| Q |
117 |
atatgatgattaaaattaaagaccttcatgtataattgcaccatgtatacttttaataattaaaaaattgtttgcccaatcaatt--aatggtgt---ca |
211 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | | || |
|
|
| T |
26056814 |
atatggtgattaaaattaaagaccttcaagtataattgcaccatgtatacttttaataattaaaaaattgtttgcccaatcaagtgaaattttatgcaca |
26056715 |
T |
|
| Q |
212 |
cgttgagatat-----gcacatgttcaattatcgtataatggactcaagtnnnnnnntttcattgaggtaatagattgagaaacaaagaagtcattaggt |
306 |
Q |
| |
|
||| | ||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26056714 |
tgttcaattatcgtatgcacatgttcctttatcgtataatggactcaagtgaaattttttcattgaggtaatagattgagaaacaaagatgtcattagga |
26056615 |
T |
|
| Q |
307 |
aaaaatcactccaaaatcacacattcctttttctatatataggtatagatgaattctcatattcccatcaaga--atgtttgagaggctagtagttcaat |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26056614 |
aaaaatcactccaaaatcacacattcctttttctatatataggtatagatgaattctcatattcccatcaagaatatgtttgagaggctagtagttcaat |
26056515 |
T |
|
| Q |
405 |
caaattcagtatcaaagtcgaagtactgaatatctgtgctc |
445 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26056514 |
caaattcagtttcaaagtcgaagtactgaatatctgtgctc |
26056474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 26113564 - 26113325
Alignment:
| Q |
17 |
gatagttcaatatcttgcagaaatagtcgtaaagactactctaatagaatcaactcaatagtcgtaaagcccccactgtgaatctccatagcagttgaaa |
116 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26113564 |
gatagttcgatatcttgcagaaatagtcgtaaagacttttctaatagaatcaactcaatagtcgtaaagcccccactgtgaatctccataacagttgaaa |
26113465 |
T |
|
| Q |
117 |
atatgatgattaaaattaaagaccttcatgtataattgcaccatgtatacttttaataattaaaaaattgtttgcccaatcaattaatggtgtcacgttg |
216 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26113464 |
atatggtgattaaaattaaagaccttcatgtataattgcaccatgcatacttttaataattaaaaaattgtttacccaatcaattaatggtgtcacgttg |
26113365 |
T |
|
| Q |
217 |
agatatgcacatgttcaattatcgtataatggactcaagt |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26113364 |
agatatgcacatgttcaattatcgtataatggactcaagt |
26113325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 339 - 445
Target Start/End: Complemental strand, 26085817 - 26085711
Alignment:
| Q |
339 |
ctatatataggtatagatgaattctcatattcccatcaagaatgtttgagaggctagtagttcaatcaaattcagtatcaaagtcgaagtactgaatatc |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26085817 |
ctatatataggtatagatgaattctcatattcccatcaagaatgtttgagaggctagtagttcaatcaaattcagtatcaaagtcgaagtactgaatatc |
26085718 |
T |
|
| Q |
439 |
tgtgctc |
445 |
Q |
| |
|
|| |||| |
|
|
| T |
26085717 |
tgcgctc |
26085711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 311 - 422
Target Start/End: Complemental strand, 26112178 - 26112067
Alignment:
| Q |
311 |
atcactccaaaatcacacattcctttttctatatataggtatagatgaattctcatattcccatcaagaatgtttgagaggctagtagttcaatcaaatt |
410 |
Q |
| |
|
|||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26112178 |
atcaatccaaaatcacatattcctttatctatatataggtatagatgtattctcatattcccatcaagaatatttgagaggctagtagttcaatcaaatt |
26112079 |
T |
|
| Q |
411 |
cagtatcaaagt |
422 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
26112078 |
cagtttcaaagt |
26112067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 26090363 - 26090294
Alignment:
| Q |
144 |
atgtataattgcaccatgtatactttt--aataattaaaaaattgtttgcccaatcaattaatggtgtca |
211 |
Q |
| |
|
||||||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26090363 |
atgtataattgcaacttgtatactttttaaataattaaaaaattgtttggccaatcaattaatggtgtca |
26090294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 26080544 - 26080475
Alignment:
| Q |
144 |
atgtataattgcaccatgtatactttt--aataattaaaaaattgtttgcccaatcaattaatggtgtca |
211 |
Q |
| |
|
||||||||||||| | |||||| |||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26080544 |
atgtataattgcagcttgtatatttttttaataattaaaaaattgtttggccaatcaattaatggtgtca |
26080475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 311
Target Start/End: Original strand, 26111765 - 26111808
Alignment:
| Q |
268 |
attgaggtaatagattgagaaacaaagaagtcattaggtaaaaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26111765 |
attgaggtaatagattgagaaacaaagaagtcattaggaaaaaa |
26111808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 26085428 - 26085465
Alignment:
| Q |
268 |
attgaggtaatagattgagaaacaaagaagtcattagg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26085428 |
attgaggtaatagattgagaaacaaagaagtcattagg |
26085465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 26121292 - 26121329
Alignment:
| Q |
268 |
attgaggtaatagattgagaaacaaagaagtcattagg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26121292 |
attgaggtaatagattgagaaacaaagaagtcattagg |
26121329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 344
Target Start/End: Complemental strand, 26086329 - 26086292
Alignment:
| Q |
307 |
aaaaatcactccaaaatcacacattcctttttctatat |
344 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26086329 |
aaaaatcactccaaaatcgcacattcctttttctatat |
26086292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 311
Target Start/End: Original strand, 26128719 - 26128762
Alignment:
| Q |
268 |
attgaggtaatagattgagaaacaaagaagtcattaggtaaaaa |
311 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
26128719 |
attgaggtaatggattgagaagcaaagaagtcattaggaaaaaa |
26128762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 26038287 - 26038329
Alignment:
| Q |
269 |
ttgaggtaatagattgagaaacaaagaagtcattaggtaaaaa |
311 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
26038287 |
ttgatgtaatagattgagaaacaaagaagccattaggaaaaaa |
26038329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 26056192 - 26056234
Alignment:
| Q |
269 |
ttgaggtaatagattgagaaacaaagaagtcattaggtaaaaa |
311 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
26056192 |
ttgaggtaatagactgagaaacaaagaagtctttaggaaaaaa |
26056234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 26067854 - 26067896
Alignment:
| Q |
269 |
ttgaggtaatagattgagaaacaaagaagtcattaggtaaaaa |
311 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
26067854 |
ttgaggtaatagactgagaaacaaagaagtctttaggaaaaaa |
26067896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University