View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18591_high_6 (Length: 430)
Name: NF18591_high_6
Description: NF18591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18591_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 21 - 412
Target Start/End: Complemental strand, 595753 - 595362
Alignment:
| Q |
21 |
aaagctgctacctttgaagaaatttccagcactctgcgaaaaggaaatggcatacctttaattcaattgaatattcataatcacattatcaatagacgta |
120 |
Q |
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| T |
595753 |
aaagctgctacctttgaagaaatttccagcactctgcgaaaaggaaatggcatacctttaattcaattgaatattcataatcacattatcaatagacgta |
595654 |
T |
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| Q |
121 |
gaaactaaagtagacgactcttgaattctcactgctctgtcaacaaactaaaatcaagcaaagcattcaagacagtaatccatttttgctatgattggta |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
595653 |
gaaactaaagtagacgactcttgaattctcactgctctgtcaacaaactaaaatcaagcaaagcaatcaagacagtaatccatttttgctatgattggta |
595554 |
T |
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| Q |
221 |
aaatagtactaaaattagtttgagcaataacaaagcctatgtattattccccttgtcctgttatgtactaaatttgcatccttcttttttatttgtttct |
320 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
595553 |
aaatagtactaaaattagtttgaacaataacaaagcctatgtattattccccttgtcctgttatgtactaaatttgcatccttcttttttatttgtttct |
595454 |
T |
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| Q |
321 |
gtttctctgctcatgctatgtggaaattggttttatgtggctgattgtcatcaatgttactcgacattcctatcataaataccgagctagct |
412 |
Q |
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| T |
595453 |
gtttctctgctcatgctatgtggacattggttttatgtggctgattgtcatcaatgttactcgacattcctatcataaataccgagctagct |
595362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 4590129 - 4590038
Alignment:
| Q |
131 |
tagacgactcttgaattctcactgctctgtcaacaaactaaaatcaagcaaagcattcaagacagtaatccatttttgctatgattggtaaa |
222 |
Q |
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| T |
4590129 |
tagacgactctcgaattctccctggtctgtcaacaaactaaaaacaagtaaagcattcaggacaggaatttatttctgctatgattggtaaa |
4590038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 360
Target Start/End: Complemental strand, 4589904 - 4589835
Alignment:
| Q |
291 |
aatttgcatccttcttttttatttgtttctgtttctctgctcatgctatgtggaaattggttttatgtgg |
360 |
Q |
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| T |
4589904 |
aatttgcatccttcccttttatttgtttcagtttctctgcacatgcaatgtggccattggttttacgtgg |
4589835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 4603770 - 4603679
Alignment:
| Q |
134 |
acgactcttgaattctcactgctctgtcaacaaactaaaatcaagcaaagcattcaagacagtaatccatttttgctatgattggtaaaata |
225 |
Q |
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|||| ||| |||||||||||| ||||| ||||| ||||| |||| |||||||||| || |||||| | || ||||||||||||||||||| |
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| T |
4603770 |
acgattctcgaattctcactgacctgtcgacaaattaaaaacaagtaaagcattcaggatagtaatttaattctgctatgattggtaaaata |
4603679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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