View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18591_high_9 (Length: 336)
Name: NF18591_high_9
Description: NF18591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18591_high_9 |
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| [»] scaffold0643 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 9e-64; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 159 - 310
Target Start/End: Original strand, 30013914 - 30014065
Alignment:
| Q |
159 |
tagttactgatgagaatcttaagcaacaaattatgttctcactagatgaaagtatctattagaataaacaaaagaactagttacaaaaagaacaaatcag |
258 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30013914 |
tagttactgatgagaatcttaagcaacaaattatgtcctcactagatgcagctatctatcagaataaacaaaagaactagttacaaaaagaacaaatcag |
30014013 |
T |
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| Q |
259 |
cacgccgtaacagcaaaaacaccacaaacagcagctataggagataagctag |
310 |
Q |
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| T |
30014014 |
cacgctgtaacagcaaaaataccacaaacagcagctataggagataagctag |
30014065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 30013715 - 30013865
Alignment:
| Q |
13 |
aatatcattgtaaaattggaatttaaattagctttgtaagaagtagaaacaaaagttatctgtgaaaaatattgttgtgttctcaaaaatcagaacattg |
112 |
Q |
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|||| |||||||||||||| |||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30013715 |
aataacattgtaaaattgggatttcaattagctttgtaagaagtagaaataaaagttatttgtgaaaaatattgttgtgttctcaaaaatcagaacattg |
30013814 |
T |
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| Q |
113 |
aaacctgcaatgaaatagtacttatgaaatacagaaagtttgcttctagtt |
163 |
Q |
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| T |
30013815 |
aaacctgcaatgaaacagtacttatgaaatacggaaagtttgcttctagtt |
30013865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 30073347 - 30073450
Alignment:
| Q |
60 |
aacaaaagttatctgtgaaaaatattgttgtgttctcaaaaatcagaacattgaaacctgcaatgaaatagtacttatgaaatacagaaagtttgcttct |
159 |
Q |
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||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30073347 |
aacaaaatttatttgtgaaaaatattgatgtgttctcaaaaatcagaacattgaaacctgcaatgaaatagtacttatgaaatacagaaagtttgcttct |
30073446 |
T |
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| Q |
160 |
agtt |
163 |
Q |
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|||| |
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| T |
30073447 |
agtt |
30073450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 159 - 260
Target Start/End: Original strand, 30073498 - 30073599
Alignment:
| Q |
159 |
tagttactgatgagaatcttaagcaacaaattatgttctcactagatgaaagtatctattagaataaacaaaagaactagttacaaaaagaacaaatcag |
258 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||| | ||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30073498 |
tagttactgatgagaatcttaagcaacaaattatatcctcactagatgcagctatatatcagaataaacaaaagaactagttacaaaaagaacaaatcag |
30073597 |
T |
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| Q |
259 |
ca |
260 |
Q |
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|| |
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| T |
30073598 |
ca |
30073599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0643 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 169 - 272
Target Start/End: Complemental strand, 8348 - 8245
Alignment:
| Q |
169 |
tgagaatcttaagcaacaaattatgttctcactagatgaaagtatctattagaataaacaaaagaactagttacaaaaagaacaaatcagcacgccgtaa |
268 |
Q |
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|||||||||||||||||||||||||| ||||||||| | || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8348 |
tgagaatcttaagcaacaaattatgtcctcactagaagcaactatctatcagaataaacaaaagaactagttacaaaaagaacaaatcagcacgccgtaa |
8249 |
T |
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| Q |
269 |
cagc |
272 |
Q |
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|||| |
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| T |
8248 |
cagc |
8245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0643; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 8232 - 8200
Alignment:
| Q |
287 |
cagcagctataggagataagctagtgagcaaac |
319 |
Q |
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| T |
8232 |
cagcagctataggagataagctagcgagcaaac |
8200 |
T |
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