View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18591_low_17 (Length: 246)

Name: NF18591_low_17
Description: NF18591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18591_low_17
NF18591_low_17
[»] chr4 (6 HSPs)
chr4 (2-228)||(30302954-30303178)
chr4 (12-72)||(30270621-30270681)
chr4 (12-72)||(30281508-30281568)
chr4 (94-135)||(30270739-30270780)
chr4 (94-135)||(30281409-30281450)
chr4 (165-224)||(26250911-26250971)
[»] chr3 (3 HSPs)
chr3 (161-224)||(47284323-47284387)
chr3 (161-222)||(46635855-46635917)
chr3 (156-224)||(46429493-46429562)
[»] chr8 (2 HSPs)
chr8 (156-209)||(9982630-9982683)
chr8 (163-224)||(31976603-31976664)
[»] chr7 (1 HSPs)
chr7 (161-224)||(29065916-29065980)
[»] chr6 (1 HSPs)
chr6 (163-226)||(9763107-9763171)
[»] chr5 (1 HSPs)
chr5 (161-221)||(35379342-35379402)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 30302954 - 30303178
Alignment:
Q  2 aataaaattcaaataatttaggttaatttgatcaaacatatatagtaccacaagtgaaaaattataattaaggtgacccaatatagtgatgcagctctag 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30302954 aataaaattcaaataatttaggttaatttgatcaaacatatatagtaccacaagtgaaaaattataattaaggtgacccaatatggtgatgcagctctag 30303053  T
Q  102 ataccataagatttagagagagttttgtagtatggaggtgtttcggttgtattaaaccgttagagtgtttttggata-gagaatattttaagttaatgta 200  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||| ||||||||||||||||||| |||| |||||| |||||||||||||||    
T  30303054 ataccataagatttagagagagttttgtagtat---ggtgtttcggttgtatcaaaccgttagagtgtttttagataggagaatgttttaagttaatgta 30303150  T
Q  201 atgttttgacgaaattcaaatattgttt 228  Q
    ||||||||||||||||||||||||||||    
T  30303151 atgttttgacgaaattcaaatattgttt 30303178  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 30270621 - 30270681
Alignment:
Q  12 aaataatttaggttaatttgatcaaacatatatagtaccacaagtgaaaaattataattaa 72  Q
    ||||||||||| |||||||||| ||||||||||| ||| |||| |||||||||||||||||    
T  30270621 aaataatttagattaatttgatgaaacatatataatactacaattgaaaaattataattaa 30270681  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 30281568 - 30281508
Alignment:
Q  12 aaataatttaggttaatttgatcaaacatatatagtaccacaagtgaaaaattataattaa 72  Q
    ||||||||||| |||||||||| ||||||||||| ||| |||| |||||||||||||||||    
T  30281568 aaataatttagattaatttgatgaaacatatataatactacaattgaaaaattataattaa 30281508  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 30270739 - 30270780
Alignment:
Q  94 agctctagataccataagatttagagagagttttgtagtatg 135  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  30270739 agctctagatactataagatttagagagaattttgtagtatg 30270780  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 30281450 - 30281409
Alignment:
Q  94 agctctagataccataagatttagagagagttttgtagtatg 135  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  30281450 agctctagatactataagatttagagagaattttgtagtatg 30281409  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 26250911 - 26250971
Alignment:
Q  165 agtgtttttggat-agagaatattttaagttaatgtaatgttttgacgaaattcaaatatt 224  Q
    ||||| ||||||| || ||||||||| || |||||||||||||||| ||||||||| ||||    
T  26250911 agtgtgtttggatgagggaatattttgaggtaatgtaatgttttgaggaaattcaattatt 26250971  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 47284387 - 47284323
Alignment:
Q  161 ttagagtgtttttggat-agagaatattttaagttaatgtaatgttttgacgaaattcaaatatt 224  Q
    ||||||||| ||||||| |||||||||||| || |||||||||||||||| | ||||||| ||||    
T  47284387 ttagagtgtgtttggatgagagaatattttgaggtaatgtaatgttttgagggaattcaattatt 47284323  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 46635855 - 46635917
Alignment:
Q  161 ttagagtgtttttggat-agagaatattttaagttaatgtaatgttttgacgaaattcaaata 222  Q
    ||||||||| ||||||| ||| ||| |||| || |||||||||||||||| ||||||||||||    
T  46635855 ttagagtgtgtttggatgagaaaatgttttgagctaatgtaatgttttgaggaaattcaaata 46635917  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 46429562 - 46429493
Alignment:
Q  156 aaccgttagagtgtttttggat-agagaatattttaagttaatgtaatgttttgacgaaattcaaatatt 224  Q
    |||| ||||||||| ||||||| || ||||||||| || |||||||||||||||| | ||||||| ||||    
T  46429562 aacccttagagtgtgtttggatgagggaatattttgaggtaatgtaatgttttgaaggaattcaattatt 46429493  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 9982630 - 9982683
Alignment:
Q  156 aaccgttagagtgtttttggatagagaatattttaagttaatgtaatgttttga 209  Q
    |||| |||||| || ||||||| |||||| ||||||| ||||||||||||||||    
T  9982630 aacctttagagcgtgtttggatggagaatgttttaaggtaatgtaatgttttga 9982683  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 31976664 - 31976603
Alignment:
Q  163 agagtgtttttggatagagaatattttaagttaatgtaatgttttgacgaaattcaaatatt 224  Q
    ||||||||||||||| | | ||||||| |  |||||||||| ||||| ||||||||||||||    
T  31976664 agagtgtttttggatgggggatattttgaagtaatgtaatgctttgaggaaattcaaatatt 31976603  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 29065980 - 29065916
Alignment:
Q  161 ttagagtgtttttggatagag-aatattttaagttaatgtaatgttttgacgaaattcaaatatt 224  Q
    ||||||||| ||||||| ||| ||| ||||||| |||||||||||||||| | ||||||| ||||    
T  29065980 ttagagtgtgtttggatggaggaatgttttaaggtaatgtaatgttttgagggaattcaattatt 29065916  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 9763171 - 9763107
Alignment:
Q  163 agagtgtttttggatagag-aatattttaagttaatgtaatgttttgacgaaattcaaatattgt 226  Q
    ||||||| ||||||| ||| |||||||| || |||||||||||||||| | ||||||| ||||||    
T  9763171 agagtgtgtttggatggaggaatattttgaggtaatgtaatgttttgagggaattcaattattgt 9763107  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 35379342 - 35379402
Alignment:
Q  161 ttagagtgtttttggatagagaatattttaagttaatgtaatgttttgacgaaattcaaat 221  Q
    ||||||||| ||||||| | |||| |||| || |||||||||||||||| | |||||||||    
T  35379342 ttagagtgtgtttggatggggaatgttttgagataatgtaatgttttgagggaattcaaat 35379402  T

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