View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18591_low_2 (Length: 551)

Name: NF18591_low_2
Description: NF18591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18591_low_2
NF18591_low_2
[»] chr2 (22 HSPs)
chr2 (1-511)||(42634985-42635468)
chr2 (69-315)||(42628917-42629159)
chr2 (66-279)||(42640068-42640281)
chr2 (387-524)||(5139981-5140114)
chr2 (383-524)||(864111-864248)
chr2 (383-499)||(7709779-7709894)
chr2 (373-474)||(37285172-37285273)
chr2 (378-486)||(6951724-6951833)
chr2 (378-496)||(23403724-23403842)
chr2 (385-486)||(8503809-8503909)
chr2 (401-499)||(9132273-9132371)
chr2 (383-474)||(35714531-35714621)
chr2 (399-483)||(14960696-14960780)
chr2 (371-497)||(12988040-12988166)
chr2 (383-474)||(27183809-27183904)
chr2 (383-474)||(27833351-27833446)
chr2 (371-454)||(21215341-21215422)
chr2 (397-472)||(15358705-15358780)
chr2 (383-458)||(42763774-42763849)
chr2 (383-465)||(21447172-21447254)
chr2 (378-411)||(9132267-9132300)
chr2 (382-458)||(37195237-37195312)
[»] chr4 (17 HSPs)
chr4 (373-524)||(37306417-37306564)
chr4 (372-486)||(43480264-43480378)
chr4 (386-524)||(31699490-31699624)
chr4 (383-524)||(51475175-51475312)
chr4 (369-474)||(50251510-50251615)
chr4 (378-497)||(30111795-30111913)
chr4 (378-499)||(6540251-6540372)
chr4 (423-480)||(51823131-51823188)
chr4 (425-498)||(5994940-5995013)
chr4 (399-465)||(16650521-16650587)
chr4 (425-499)||(27654511-27654585)
chr4 (431-483)||(27362638-27362690)
chr4 (399-474)||(21710578-21710652)
chr4 (383-470)||(26369048-26369135)
chr4 (383-465)||(49738954-49739036)
chr4 (418-463)||(27789954-27789999)
chr4 (420-476)||(7283216-7283272)
[»] chr1 (20 HSPs)
chr1 (378-498)||(19078939-19079059)
chr1 (378-498)||(19126827-19126947)
chr1 (378-524)||(24886065-24886207)
chr1 (383-524)||(29068111-29068248)
chr1 (378-486)||(932007-932115)
chr1 (378-498)||(31602087-31602207)
chr1 (383-498)||(14562565-14562680)
chr1 (378-453)||(11709656-11709731)
chr1 (395-499)||(16173053-16173156)
chr1 (395-460)||(52444448-52444512)
chr1 (383-470)||(43275838-43275925)
chr1 (387-498)||(17642388-17642497)
chr1 (381-499)||(8050003-8050121)
chr1 (378-458)||(11135814-11135894)
chr1 (371-422)||(19079022-19079073)
chr1 (371-422)||(19126910-19126961)
chr1 (433-476)||(24733928-24733971)
chr1 (456-499)||(31602093-31602136)
chr1 (431-476)||(24733817-24733862)
chr1 (372-412)||(48863755-48863795)
[»] chr7 (25 HSPs)
chr7 (373-499)||(557409-557535)
chr7 (379-474)||(39237689-39237784)
chr7 (378-499)||(47822007-47822128)
chr7 (378-498)||(43929994-43930112)
chr7 (383-499)||(36738485-36738606)
chr7 (395-497)||(17878725-17878827)
chr7 (390-524)||(41873447-41873577)
chr7 (399-474)||(42815604-42815679)
chr7 (369-499)||(45508529-45508657)
chr7 (407-469)||(48745290-48745352)
chr7 (418-483)||(29310470-29310535)
chr7 (403-483)||(32377306-32377386)
chr7 (375-483)||(25695904-25696012)
chr7 (417-470)||(16082817-16082870)
chr7 (389-474)||(46947819-46947903)
chr7 (378-465)||(49160314-49160401)
chr7 (397-474)||(3399043-3399124)
chr7 (378-462)||(26703465-26703549)
chr7 (372-451)||(32000434-32000514)
chr7 (375-410)||(22159050-22159085)
chr7 (375-410)||(22217758-22217793)
chr7 (378-462)||(19840910-19840994)
chr7 (426-462)||(22786222-22786258)
chr7 (378-422)||(36738568-36738612)
chr7 (378-458)||(45909531-45909611)
[»] chr8 (26 HSPs)
chr8 (378-499)||(33440536-33440657)
chr8 (377-533)||(6580856-6581007)
chr8 (378-474)||(28700581-28700677)
chr8 (369-486)||(45057954-45058071)
chr8 (378-483)||(30085426-30085531)
chr8 (378-499)||(1311472-1311593)
chr8 (395-474)||(33133475-33133554)
chr8 (379-469)||(35188416-35188506)
chr8 (383-476)||(12212155-12212248)
chr8 (383-476)||(12456583-12456676)
chr8 (443-524)||(16896336-16896413)
chr8 (386-480)||(14022030-14022124)
chr8 (390-483)||(13990490-13990583)
chr8 (399-459)||(31703822-31703882)
chr8 (383-483)||(34434946-34435046)
chr8 (435-474)||(31024183-31024222)
chr8 (372-455)||(38695671-38695754)
chr8 (399-469)||(902419-902489)
chr8 (378-468)||(16441832-16441922)
chr8 (395-478)||(4480286-4480369)
chr8 (448-483)||(34172507-34172542)
chr8 (378-483)||(6387611-6387716)
chr8 (372-469)||(35494150-35494246)
chr8 (378-439)||(14195233-14195298)
chr8 (383-443)||(16895274-16895334)
chr8 (378-458)||(33417757-33417837)
[»] chr6 (6 HSPs)
chr6 (378-524)||(32439504-32439646)
chr6 (378-486)||(7447611-7447718)
chr6 (396-495)||(17221547-17221646)
chr6 (376-498)||(30479895-30480018)
chr6 (437-480)||(28030569-28030612)
chr6 (383-467)||(28030642-28030726)
[»] chr5 (28 HSPs)
chr5 (378-524)||(30892135-30892277)
chr5 (373-499)||(18237168-18237294)
chr5 (373-531)||(17190613-17190769)
chr5 (386-499)||(5990551-5990664)
chr5 (374-483)||(32153741-32153850)
chr5 (378-499)||(42958466-42958587)
chr5 (383-469)||(41020240-41020326)
chr5 (369-469)||(34320922-34321022)
chr5 (378-474)||(28436460-28436556)
chr5 (373-460)||(10393791-10393878)
chr5 (373-457)||(27726818-27726902)
chr5 (395-486)||(2976559-2976650)
chr5 (389-499)||(40699511-40699622)
chr5 (369-469)||(41746132-41746230)
chr5 (397-499)||(26435319-26435420)
chr5 (372-422)||(26435382-26435432)
chr5 (371-452)||(16875283-16875364)
chr5 (386-454)||(2406004-2406072)
chr5 (395-483)||(34457661-34457748)
chr5 (371-411)||(40699498-40699538)
chr5 (383-462)||(26072174-26072253)
chr5 (409-483)||(1249028-1249102)
chr5 (399-461)||(6198601-6198663)
chr5 (388-458)||(42224626-42224696)
chr5 (369-422)||(18237153-18237206)
chr5 (381-422)||(22524395-22524436)
chr5 (435-483)||(9693437-9693485)
chr5 (395-474)||(38732427-38732504)
[»] chr3 (20 HSPs)
chr3 (386-499)||(48543175-48543288)
chr3 (378-499)||(54186961-54187082)
chr3 (378-533)||(29235675-29235828)
chr3 (378-484)||(13639430-13639536)
chr3 (378-511)||(38602836-38602967)
chr3 (358-486)||(46893391-46893517)
chr3 (395-499)||(20909325-20909429)
chr3 (377-483)||(28215775-28215881)
chr3 (373-499)||(50320436-50320561)
chr3 (378-469)||(42780698-42780789)
chr3 (372-470)||(46156684-46156780)
chr3 (373-438)||(45800738-45800801)
chr3 (378-458)||(27243120-27243200)
chr3 (415-481)||(26223190-26223256)
chr3 (399-460)||(357833-357894)
chr3 (375-420)||(3770541-3770586)
chr3 (430-499)||(54140813-54140882)
chr3 (372-458)||(50661541-50661627)
chr3 (446-483)||(1741335-1741372)
chr3 (397-461)||(1717764-1717828)
[»] scaffold0922 (1 HSPs)
scaffold0922 (395-474)||(710-789)
[»] scaffold0147 (1 HSPs)
scaffold0147 (371-498)||(28331-28458)
[»] scaffold0294 (1 HSPs)
scaffold0294 (407-468)||(17925-17985)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 42634985 - 42635468
Alignment:
Q  1 gaattcttgtgtaacaatgtcagccacgttgacatcattgctaggaccaggagtactaggtgaaatttggcccgcataacaaggaccttgtttgcaccct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42634985 gaattcttgtgtaacaatgtcagccacgttgacatcattgctaggaccaggagtactaggtgaaatttggcccgcataacaaggaccttgtttgcaccct 42635084  T
Q  101 gtgccacaatatggatcagtgttaccacaatatccatgttcgctacaacataagccttcctcacacccacaattttgagcactcgtattttttgaaacca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  42635085 gtgccacaatatggatcagtgttaccacaatatccatgttcgctacaacataagccttcctcacacccacaattttgagcactcgtatttttt------- 42635177  T
Q  201 tgatcataataagaaaggttatagcaagttttgctatagacatgcttagtaacttttttcccatcatagtgatattatgggtgggaggtattgaagttga 300  Q
                |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42635178 ------------gaaaggttatagcaagttttactatagacatgcttggtaacttttttcccatcatagtgatattattggtgggaggtattgaagttga 42635265  T
Q  301 gttaagatatttaatgaggtagtagagatgcggttagcaagaccctatttatattgatgaggagtatcatgaacactctctttctaacactcaatctctt 400  Q
    ||||||||||||||| |||| || |||||| |||  | |      |||||||||||| |||||||   ||| ||||||||||||||| || || | | ||    
T  42635266 gttaagatatttaatcaggtggtggagatgtggt--gta------tatttatattgacgaggagtgctatggacactctctttctaatacccactttttt 42635357  T
Q  401 attgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgttagt 500  Q
    ||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||    
T  42635358 attgggtgaaattcatgtgggtaccacacattgaaaatggattccacataaagtgatgagacccacatgagtttcatccaataggacgatgagtgttagt 42635457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 69 - 315
Target Start/End: Original strand, 42628917 - 42629159
Alignment:
Q  69 ggcccgcataacaaggaccttgtttgcaccctgtgccacaatatggatcagtgttaccacaatatccatgttcgctacaacataagccttcctcacaccc 168  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  || |||||||||||| ||||||||||||||    
T  42628917 ggcctgcataacaaggaccttgtttgcaccctgtgccacaatatggatcagtgttaccacagtacccaaattggctacaacataaaccttcctcacaccc 42629016  T
Q  169 acaattttgagcactcgtattttttgaaaccatgatcataataagaaaggttatagcaagttttgctatagacatgcttagtaacttttttcccatcata 268  Q
    |||||||||||||||  || |||||| |||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| | || ||||| ||||||    
T  42629017 acaattttgagcactaatactttttggaaccataatcataataaaaaaggctatagcaagttttgctatagacatgcttagtgatttgtttcctatcata 42629116  T
Q  269 gtgatattatgggtgggaggtattgaagttgagttaagatatttaat 315  Q
    || ||||||    ||||||||||||||||||||||||||||||||||    
T  42629117 gtcatatta----tgggaggtattgaagttgagttaagatatttaat 42629159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 66 - 279
Target Start/End: Original strand, 42640068 - 42640281
Alignment:
Q  66 tttggcccgcataacaaggaccttgtttgcaccctgtgccacaatatggatcagtgttaccacaatatccatgttcgctacaacataagccttcctcaca 165  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||   ||||||||||| || | || ||| ||||| |  |||||  ||||    
T  42640068 tttggcctgcataacaaggaccttgtttgcaccctgtgccacaatatgcatcaccattaccacaatacccgtattggctgcaacacactccttcagcaca 42640167  T
Q  166 cccacaattttgagcactcgtattttttgaaaccatgatcataataagaaaggttatagcaagttttgctatagacatgcttagtaacttttttcccatc 265  Q
    ||||||||||||||||||   |||||||| ||||||||||||||||| ||||| ||| |||||| |||| ||| | ||||||||| | || |||||||||    
T  42640168 cccacaattttgagcactaacattttttggaaccatgatcataataaaaaaggctatggcaagtgttgccatacatatgcttagtgatttgtttcccatc 42640267  T
Q  266 atagtgatattatg 279  Q
    ||||| ||||||||    
T  42640268 atagtcatattatg 42640281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 387 - 524
Target Start/End: Complemental strand, 5140114 - 5139981
Alignment:
Q  387 acactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagga 486  Q
    ||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| | |||||||||    
T  5140114 acactcactctcttattgagtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgaaacccgcatgagtttcacccaatagga 5140015  T
Q  487 caatgagtgttagttaaagaaagtgctagaaagagagt 524  Q
     | ||||||||||    ||| |||||||||||||||||    
T  5140014 gagtgagtgttag----agagagtgctagaaagagagt 5139981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 383 - 524
Target Start/End: Complemental strand, 864248 - 864111
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaat 482  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| | |||| ||||| || |||| |||||||    
T  864248 tctaacactcactctcttattgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaagcgatgagccccacttgggtttcatccaat 864149  T
Q  483 aggacaatgagtgttagttaaagaaagtgctagaaagagagt 524  Q
    || | ||| ||||||||    ||| |||||||||||||||||    
T  864148 agaaaaataagtgttag----agagagtgctagaaagagagt 864111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 383 - 499
Target Start/End: Original strand, 7709779 - 7709894
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaat 482  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| | || ||    
T  7709779 tctaacactcactcttttattgggtgaa-tttatgtgggtaccacacattggaaatagatcccacataaagtggtgagtcccacatgagtttcaccctat 7709877  T
Q  483 aggacaatgagtgttag 499  Q
    |||| | ||||||||||    
T  7709878 aggagagtgagtgttag 7709894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 373 - 474
Target Start/End: Complemental strand, 37285273 - 37285172
Alignment:
Q  373 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 472  Q
    ||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||| || ||||||    
T  37285273 acactctctttctaacactcactcttttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacgtaaagtgatgagactcaaatgagt 37285174  T
Q  473 tt 474  Q
    ||    
T  37285173 tt 37285172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 378 - 486
Target Start/End: Original strand, 6951724 - 6951833
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaattt-atgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttta 476  Q
    |||||| | ||||| | |||||||||| |||||| || |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  6951724 ctctttgtgacactaactctcttattgagtgaaaattcatgtgggtgccacacattgaaaatggatcccacataaagtggtgagacccacatgagtttca 6951823  T
Q  477 tccaatagga 486  Q
    ||||||||||    
T  6951824 tccaatagga 6951833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 378 - 496
Target Start/End: Complemental strand, 23403842 - 23403724
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    ||||||||||| |||| ||||||| ||||||||||  ||||||||||||||| |||||||||| ||||| |||||| || ||||||||||||||||| |     
T  23403842 ctctttctaaccctcactctcttactgggtgaaatccatgtgggtaccacactttggaaatgggtcccaaataaagcggcgagacccacatgagtttcac 23403743  T
Q  478 ccaataggacaatgagtgt 496  Q
    ||||| ||| | |||||||    
T  23403742 ccaattggagagtgagtgt 23403724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 385 - 486
Target Start/End: Original strand, 8503809 - 8503909
Alignment:
Q  385 taacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatag 484  Q
    ||||||||| ||| |||||||||||||| ||||||| |||| ||||||  ||||| ||| ||||||||||||||||| |||||||||||| |||||||||    
T  8503809 taacactcactct-ttattgggtgaaatctatgtggataccgcacattaaaaatgaatctcacataaagtggtgagatccacatgagtttcatccaatag 8503907  T
Q  485 ga 486  Q
    ||    
T  8503908 ga 8503909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 401 - 499
Target Start/End: Complemental strand, 9132371 - 9132273
Alignment:
Q  401 attgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgttag 499  Q
    |||||||||||| |||||||||||||| | |||||||| | | ||||||||| ||||||||||||| || |||| | |||||| || | ||||||||||    
T  9132371 attgggtgaaatctatgtgggtaccactctttggaaattggttccacataaaatggtgagacccacttgggtttcacccaataagagagtgagtgttag 9132273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 474
Target Start/End: Complemental strand, 35714621 - 35714531
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 474  Q
    |||||||| || |||||| |||| ||||||  ||||||||||||||| |||||||||| || | ||||||||||||||||| ||||| ||||    
T  35714621 tctaacacccactctcttgttggatgaaatccatgtgggtaccacactttggaaatgg-tctcgcataaagtggtgagacctacatgggttt 35714531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 483
Target Start/End: Complemental strand, 14960780 - 14960696
Alignment:
Q  399 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 483  Q
    ||||||| |||||||||||||| ||| |||||||| ||||||||| |||||||| | |||||||  | |||||||| | ||||||    
T  14960780 ttattggatgaaatttatgtggatactacacattgaaaatggatctcacataaaatagtgagacttatatgagtttcacccaata 14960696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 497
Target Start/End: Complemental strand, 12988166 - 12988040
Alignment:
Q  371 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 470  Q
    |||||| ||||||| |||||||  | ||||||||||  || |  |||||||| | |||| ||||||||   ||||||||||||||||||||||||| ||     
T  12988166 gaacaccctctttccaacactccctgtcttattgggcaaactcaatgtgggtccaacactttggaaataagtcccacataaagtggtgagacccacttgg 12988067  T
Q  471 gttttatccaataggacaatgagtgtt 497  Q
    |||| ||||| | ||| | ||||||||    
T  12988066 gtttaatccagttggagagtgagtgtt 12988040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 474
Target Start/End: Complemental strand, 27183904 - 27183809
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccac----ataaagtggtgagacccacatgagttt 474  Q
    |||||||| || ||||||||| ||||||||  ||||| |||| |||| |||||||||||||  ||    |||||||||||||||| ||||||||||    
T  27183904 tctaacacacattctcttattaggtgaaatccatgtgagtactacacgttggaaatggatcttacatatataaagtggtgagacctacatgagttt 27183809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 474
Target Start/End: Complemental strand, 27833446 - 27833351
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccac----ataaagtggtgagacccacatgagttt 474  Q
    |||||||| || ||||||||| ||||||||  ||||| |||| |||| |||||||||||||  ||    |||||||||||||||| ||||||||||    
T  27833446 tctaacacacattctcttattaggtgaaatccatgtgagtactacacgttggaaatggatcttacatatataaagtggtgagacctacatgagttt 27833351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 454
Target Start/End: Original strand, 21215341 - 21215422
Alignment:
Q  371 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagt 454  Q
    |||||||||||||  ||||||||  ||| |||||||| ||||| |||||  | |||||| ||| ||||||||||||||||||||    
T  21215341 gaacactctcttttcaacactca--ctcatattgggtaaaattaatgtgaatcccacactttgaaaatggatcccacataaagt 21215422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 472
Target Start/End: Complemental strand, 15358780 - 15358705
Alignment:
Q  397 tcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 472  Q
    |||||||| |||||||| |||||| ||| ||||  || |||| ||||||||||||| | |||||||||| ||||||    
T  15358780 tcttattgtgtgaaattcatgtggatactacactatgaaaatagatcccacataaaatagtgagacccagatgagt 15358705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 458
Target Start/End: Complemental strand, 42763849 - 42763774
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 458  Q
    ||||||||||  ||||||||| ||||||||  |||||| |  ||||| |||||||||| || ||||||||||||||    
T  42763849 tctaacactcgttctcttattaggtgaaatcaatgtggttctcacactttggaaatgggtctcacataaagtggtg 42763774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 465
Target Start/End: Complemental strand, 21447254 - 21447172
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagaccca 465  Q
    |||||||| || ||| |||||| |||||||  ||||||||   |||| |||||||||| ||||||||||| ||||| ||||||    
T  21447254 tctaacacccactcttttattgtgtgaaatcaatgtgggtcttacactttggaaatgggtcccacataaaatggtgggaccca 21447172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 411
Target Start/End: Original strand, 9132267 - 9132300
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaa 411  Q
    |||||||||||||||| |||||||||||||||||    
T  9132267 ctctttctaacactcactctcttattgggtgaaa 9132300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 458
Target Start/End: Original strand, 37195237 - 37195312
Alignment:
Q  382 ttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 458  Q
    |||||||||||| ||| |||||   ||||||  |||||||||||| |||||  ||||||||| ||||||||||||||    
T  37195237 ttctaacactcactcttttattta-tgaaatcaatgtgggtaccaaacattaaaaatggatctcacataaagtggtg 37195312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 373 - 524
Target Start/End: Complemental strand, 37306564 - 37306417
Alignment:
Q  373 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 472  Q
    ||||| ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37306564 acactttctttctaacactcactttcttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacataaagtggtgagacccacatgagt 37306465  T
Q  473 tttatccaataggacaatgagtgttagttaaagaaagtgctagaaagagagt 524  Q
    || | ||||||  | | ||||||||||    ||| |||||||||||||||||    
T  37306464 ttcacccaatataagagtgagtgttag----agagagtgctagaaagagagt 37306417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 372 - 486
Target Start/End: Original strand, 43480264 - 43480378
Alignment:
Q  372 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgag 471  Q
    ||||| |||| ||||||||||| | ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43480264 aacaccctctctctaacactcactttcttattggctgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacatgag 43480363  T
Q  472 ttttatccaatagga 486  Q
    ||| | |||||||||    
T  43480364 tttcacccaatagga 43480378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 386 - 524
Target Start/End: Complemental strand, 31699624 - 31699490
Alignment:
Q  386 aacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagg 485  Q
    |||||||| ||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||||    
T  31699624 aacactcactctcttattgggtgaaattcatgtgggtatcatacattggaaatggaccccacataaaatggtgagacccacatgtgtttaatccaatagg 31699525  T
Q  486 acaatgagtgttagttaaagaaagtgctagaaagagagt 524  Q
    | | ||||||||||    ||| |||||||||||||||||    
T  31699524 agagtgagtgttag----agagagtgctagaaagagagt 31699490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 383 - 524
Target Start/End: Complemental strand, 51475312 - 51475175
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaat 482  Q
    |||||||| || ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| | |||||    
T  51475312 tctaacacccactctcttattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagatccacatgggtttcacccaat 51475213  T
Q  483 aggacaatgagtgttagttaaagaaagtgctagaaagagagt 524  Q
    | ||   ||||||||||    ||| |||||||||||||||||    
T  51475212 aagagggtgagtgttag----agagagtgctagaaagagagt 51475175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 369 - 474
Target Start/End: Complemental strand, 50251615 - 50251510
Alignment:
Q  369 atgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 468  Q
    ||||||||||||||||||||||||| | | ||||||||||||||| |||||| |||||||| ||| ||||||||||||| |||| ||||||||| |||||    
T  50251615 atgaacactctctttctaacactcacttttttattgggtgaaattcatgtggataccacacgttgaaaatggatcccacgtaaaatggtgagactcacat 50251516  T
Q  469 gagttt 474  Q
    ||||||    
T  50251515 gagttt 50251510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 378 - 497
Target Start/End: Original strand, 30111795 - 30111913
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||| ||||||||||| | ||||||||| ||||| | |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |     
T  30111795 ctctctctaacactcactttcttattggatgaaagtcatgtgggtaccacacattgg-aattgatcccacataaagtggtgagatccacatgagtttcac 30111893  T
Q  478 ccaataggacaatgagtgtt 497  Q
    |||||| || | ||||||||    
T  30111894 ccaatatgagagtgagtgtt 30111913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 378 - 499
Target Start/End: Original strand, 6540251 - 6540372
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||||| |||||  || ||||||||||||||||||  |||||| || || ||||||||||||||||| ||| |||||||||||| |||||| ||||| |     
T  6540251 ctctttgtaacatccactctcttattgggtgaaatcaatgtggttatcatacattggaaatggatcctacacaaagtggtgagatccacataagtttcac 6540350  T
Q  478 ccaataggacaatgagtgttag 499  Q
    ||||||||| ||||||||||||    
T  6540351 ccaataggagaatgagtgttag 6540372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 423 - 480
Target Start/End: Original strand, 51823131 - 51823188
Alignment:
Q  423 accacacattggaaatggatcccacataaagtggtgagacccacatgagttttatcca 480  Q
    ||||||||||  ||||||||| |||||||||||||||||||||||||||||| |||||    
T  51823131 accacacattaaaaatggatcgcacataaagtggtgagacccacatgagtttcatcca 51823188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 498
Target Start/End: Original strand, 5994940 - 5995013
Alignment:
Q  425 cacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgtta 498  Q
    |||||||||||||||| | |||| |||||||||||| |  |||| |||||||||||||| || |||||||||||    
T  5994940 cacacattggaaatgggttccacttaaagtggtgagtcatacattagttttatccaataagagaatgagtgtta 5995013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 465
Target Start/End: Complemental strand, 16650587 - 16650521
Alignment:
Q  399 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagaccca 465  Q
    ||||||| ||||||||||||||| |||| |||| | |||||||||||||||||  ||| ||||||||    
T  16650587 ttattggatgaaatttatgtgggcaccaaacatcgaaaatggatcccacataagttggcgagaccca 16650521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 499
Target Start/End: Complemental strand, 27654585 - 27654511
Alignment:
Q  425 cacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgttag 499  Q
    ||||| |||||||||| | |||| |||||||||| |||  |||| |||||||||||||| || ||||||||||||    
T  27654585 cacacgttggaaatgggttccacttaaagtggtgggacatacattagttttatccaataagagaatgagtgttag 27654511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 483
Target Start/End: Original strand, 27362638 - 27362690
Alignment:
Q  431 ttggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 483  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||| || |||||    
T  27362638 ttggaaatggatctcacgtaaagtggtgagatccacatgagtttcattcaata 27362690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 474
Target Start/End: Complemental strand, 21710652 - 21710578
Alignment:
Q  399 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 474  Q
    ||||| ||||||||||||||||||| |||| |||| |||| || | ||||||||||| | |||| |||||||||||    
T  21710652 ttatttggtgaaatttatgtgggtatcacaaattgaaaataga-ctcacataaagtgataagactcacatgagttt 21710578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 470
Target Start/End: Original strand, 26369048 - 26369135
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 470  Q
    |||| |||||| ||||||||| ||||||| |  |||||||  ||| | || |||||| | ||||||||||||| ||||||||||||||    
T  26369048 tctagcactcactctcttattcggtgaaactcgtgtgggtctcacgctttagaaatgaaacccacataaagtgatgagacccacatga 26369135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 465
Target Start/End: Original strand, 49738954 - 49739036
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagaccca 465  Q
    ||||||||||| ||| ||||| ||||||||  ||||||||   |||| |||||||| | |||||||||| |||||| ||||||    
T  49738954 tctaacactcactcttttatttggtgaaatccatgtgggtcatacactttggaaattggtcccacataatgtggtgggaccca 49739036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 463
Target Start/End: Original strand, 27789954 - 27789999
Alignment:
Q  418 tgggtaccacacattggaaatggatcccacataaagtggtgagacc 463  Q
    ||||||||||  |||| |||||||| ||||||||||||||||||||    
T  27789954 tgggtaccaccaattgtaaatggataccacataaagtggtgagacc 27789999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 476
Target Start/End: Complemental strand, 7283272 - 7283216
Alignment:
Q  420 ggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttta 476  Q
    ||||| ||||||||||||| ||||||| ||||| |  |||||||||||||| |||||    
T  7283272 ggtacgacacattggaaatagatcccagataaaatattgagacccacatgaatttta 7283216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 378 - 498
Target Start/End: Original strand, 19078939 - 19079059
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||| ||||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  19078939 ctctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcac 19079038  T
Q  478 ccaataggacaatgagtgtta 498  Q
    ||||||||| | |||||||||    
T  19079039 ccaataggagagtgagtgtta 19079059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 378 - 498
Target Start/End: Original strand, 19126827 - 19126947
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||| ||||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  19126827 ctctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcac 19126926  T
Q  478 ccaataggacaatgagtgtta 498  Q
    ||||||||| | |||||||||    
T  19126927 ccaataggagagtgagtgtta 19126947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 378 - 524
Target Start/End: Original strand, 24886065 - 24886207
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| |     
T  24886065 ctctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgtaaatagatcccacataaagcggtgagacccacatgagtttcac 24886164  T
Q  478 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagt 524  Q
    ||||||||| | ||||||||||    ||| |||||||||||||||||    
T  24886165 ccaataggagagtgagtgttag----agagagtgctagaaagagagt 24886207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 383 - 524
Target Start/End: Original strand, 29068111 - 29068248
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaat 482  Q
    ||||||||||| | | ||||||||||||||   ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||    
T  29068111 tctaacactcactattttattgggtgaaatacgtgtgggtaccacacattggaaattgatcccacataaaatggtgagacccacatgagtttcatccaat 29068210  T
Q  483 aggacaatgagtgttagttaaagaaagtgctagaaagagagt 524  Q
    |||| | ||||||||||    ||| |||||||||||||||||    
T  29068211 aggagagtgagtgttag----agagagtgctagaaagagagt 29068248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 378 - 486
Target Start/End: Original strand, 932007 - 932115
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||||| ||||||||  ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||     
T  932007 ctctttgtaacactcgctctctaattgggtgaaattcatgtggataccacacattggaaatggatcccacataaagtggtgagacccacgtaagttttac 932106  T
Q  478 ccaatagga 486  Q
    | |||||||    
T  932107 caaatagga 932115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 378 - 498
Target Start/End: Original strand, 31602087 - 31602207
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||| ||||||||||| ||||||||||| ||||| | ||||||||  ||||| ||||||||||||||||| ||||||||||||||||||||| |||| ||    
T  31602087 ctctctctaacactcattctcttattggatgaaactcatgtgggtctcacactttggaaatggatcccacctaaagtggtgagacccacatgtgtttcat 31602186  T
Q  478 ccaataggacaatgagtgtta 498  Q
    |||||| || | |||||||||    
T  31602187 ccaataagagagtgagtgtta 31602207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 383 - 498
Target Start/End: Complemental strand, 14562680 - 14562565
Alignment:
Q  383 tctaacactcaa-tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaa 481  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | | ||| |||||| || |||    
T  14562680 tctaacactcaactctcttattgagtgaaatttatgtaggtaccacactttggaaatggatcccacataaagtggtgaca-ctacaagagtttcattcaa 14562582  T
Q  482 taggacaatgagtgtta 498  Q
    ||||| | |||||||||    
T  14562581 taggagagtgagtgtta 14562565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 378 - 453
Target Start/End: Complemental strand, 11709731 - 11709656
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaag 453  Q
    |||| ||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  11709731 ctctctctaacactcactctcttattgagtgaaattcatgtgggtaccacacattggaaatggatcccacataaag 11709656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 395 - 499
Target Start/End: Original strand, 16173053 - 16173156
Alignment:
Q  395 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagt 494  Q
    ||||||||||||||||||  |||||| |||| ||||||||||||| |||||||||| || ||||||| ||||||| |||| | ||||||||| | |||||    
T  16173053 tctcttattgggtgaaatccatgtgg-taccccacattggaaatgaatcccacatatagaggtgagatccacatgggtttcacccaataggagagtgagt 16173151  T
Q  495 gttag 499  Q
    |||||    
T  16173152 gttag 16173156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 395 - 460
Target Start/End: Complemental strand, 52444512 - 52444448
Alignment:
Q  395 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgag 460  Q
    |||||||||||||||| | |||||||||||||||| || ||||||||||||||| |||||||||||    
T  52444512 tctcttattgggtgaa-tctatgtgggtaccacactttcgaaatggatcccacagaaagtggtgag 52444448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 470
Target Start/End: Complemental strand, 43275925 - 43275838
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 470  Q
    |||||||| || ||| |||||||||| |||  |||||||||||| |  || ||||||||||||||||||| | |||||||||||||||    
T  43275925 tctaacacacactcttttattgggtggaatccatgtgggtaccagattttcgaaatggatcccacataaaatcgtgagacccacatga 43275838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 498
Target Start/End: Original strand, 17642388 - 17642497
Alignment:
Q  387 acactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagga 486  Q
    ||||||| | ||||||| | ||||||  |||||||||||||||||| ||||||||||  |||||||||| |||||  || || ||||| ||||||||| |    
T  17642388 acactcattttcttattagctgaaatacatgtgggtaccacacattagaaatggatcatacataaagtgatgaga--catataagtttcatccaatagta 17642485  T
Q  487 caatgagtgtta 498  Q
     | |||||||||    
T  17642486 gagtgagtgtta 17642497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 499
Target Start/End: Complemental strand, 8050121 - 8050003
Alignment:
Q  381 tttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatcca 480  Q
    |||| |||| ||| ||||||||| ||||||||  || ||| ||||||||||  || |||||||| | |||||||||||||||||| |||| ||| |||      
T  8050121 tttcgaacattcactctcttattaggtgaaatcaatatggataccacacatgagacatggatccgatataaagtggtgagacccaaatgaatttcatcat 8050022  T
Q  481 ataggacaatgagtgttag 499  Q
    |||| | ||||||| ||||    
T  8050021 atagaaaaatgagtattag 8050003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 458
Target Start/End: Complemental strand, 11135894 - 11135814
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 458  Q
    |||| |||| |||||| ||| ||||||||||||||  |||| ||  | |||| ||||||||||| ||||||||||||||||    
T  11135894 ctctctctagcactcactcttttattgggtgaaatcaatgtaggacctacactttggaaatggaacccacataaagtggtg 11135814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 19079073 - 19079022
Alignment:
Q  371 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggt 422  Q
    ||||||||||||| ||||||||| |||| |||||||||||| | ||||||||    
T  19079073 gaacactctctttttaacactcactctcctattgggtgaaactcatgtgggt 19079022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 19126961 - 19126910
Alignment:
Q  371 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggt 422  Q
    ||||||||||||| ||||||||| |||| |||||||||||| | ||||||||    
T  19126961 gaacactctctttttaacactcactctcctattgggtgaaactcatgtgggt 19126910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 476
Target Start/End: Original strand, 24733928 - 24733971
Alignment:
Q  433 ggaaatggatcccacataaagtggtgagacccacatgagtttta 476  Q
    |||||||||||| |||||||||||||||| ||||||| ||||||    
T  24733928 ggaaatggatccaacataaagtggtgagatccacatgggtttta 24733971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 499
Target Start/End: Complemental strand, 31602136 - 31602093
Alignment:
Q  456 gtgagacccacatgagttttatccaataggacaatgagtgttag 499  Q
    ||||||||||||||||||| |||||||| || ||||||||||||    
T  31602136 gtgagacccacatgagtttcatccaataagagaatgagtgttag 31602093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 476
Target Start/End: Original strand, 24733817 - 24733862
Alignment:
Q  431 ttggaaatggatcccacataaagtggtgagacccacatgagtttta 476  Q
    |||||||||||||| |||||||||||||||| | ||||| ||||||    
T  24733817 ttggaaatggatccaacataaagtggtgagatcgacatgggtttta 24733862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 48863755 - 48863795
Alignment:
Q  372 aacactctctttctaacactcaatctcttattgggtgaaat 412  Q
    ||||| ||||||||||||||||  |||||||||||||||||    
T  48863755 aacacactctttctaacactcaccctcttattgggtgaaat 48863795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 373 - 499
Target Start/End: Complemental strand, 557535 - 557409
Alignment:
Q  373 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 472  Q
    ||||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  557535 acactctctttctaacactcactctcttattggatgaaattcatgtgggtatcacacattaaaaatggatcccacataaagtggtgagacccacatgagt 557436  T
Q  473 tttatccaataggacaatgagtgttag 499  Q
    || | |||||||   ||||||||||||    
T  557435 ttcacccaatagattaatgagtgttag 557409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 379 - 474
Target Start/End: Original strand, 39237689 - 39237784
Alignment:
Q  379 tctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 474  Q
    |||||| |||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39237689 tctttccaacactcactcttttattgggtgaagtttatgtgggtaccacacattggaaatggatcccatataaagtggtgagacccacatgagttt 39237784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 378 - 499
Target Start/End: Original strand, 47822007 - 47822128
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||| ||||||||||| |||  |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |     
T  47822007 ctctctctaacactcactcttatattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagatccacatgggtttcac 47822106  T
Q  478 ccaataggacaatgagtgttag 499  Q
    ||||||| | | ||||||||||    
T  47822107 ccaatagaagagtgagtgttag 47822128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 378 - 498
Target Start/End: Complemental strand, 43930112 - 43929994
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||| |||||| | ||||||    
T  43930112 ctctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgaaaatggatcaca-ataaagtggtgaga-ccacattaattttat 43930015  T
Q  478 ccaataggacaatgagtgtta 498  Q
    |||||| |||||||| |||||    
T  43930014 ccaataagacaatgaatgtta 43929994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 383 - 499
Target Start/End: Original strand, 36738485 - 36738606
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccaca-----cattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    ||||||| ||| |||||||||| |||||||| ||| ||||||||||     | |||||||||||||||||||||||||||||||||||||||||||| |     
T  36738485 tctaacattcactctcttattgagtgaaattcatgcgggtaccacaacacacgttggaaatggatcccacataaagtggtgagacccacatgagtttcac 36738584  T
Q  478 ccaataggacaatgagtgttag 499  Q
    ||||||||| | ||||||||||    
T  36738585 ccaataggagagtgagtgttag 36738606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 395 - 497
Target Start/End: Original strand, 17878725 - 17878827
Alignment:
Q  395 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagt 494  Q
    ||||||||||||||||| | ||||||||| |||||||| ||||| |||||||||||||||||||||| | |||||||||| | | ||||||| |||||||    
T  17878725 tctcttattgggtgaaagtcatgtgggtatcacacattagaaatagatcccacataaagtggtgagatcgacatgagtttcagctaataggagaatgagt 17878824  T
Q  495 gtt 497  Q
    |||    
T  17878825 gtt 17878827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 390 - 524
Target Start/End: Complemental strand, 41873577 - 41873447
Alignment:
Q  390 ctcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaa 489  Q
    |||| ||| |||||||||||| || |||||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||| | ||||||  | |     
T  41873577 ctcactcttttattgggtgaagttcatgtgggtaccacacattagaaatggaacccacataaagtgatgagactcacatgagtttcacccaataaaaaag 41873478  T
Q  490 tgagtgttagttaaagaaagtgctagaaagagagt 524  Q
    ||||||||||    ||| |||||||||||||||||    
T  41873477 tgagtgttag----agagagtgctagaaagagagt 41873447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 399 - 474
Target Start/End: Original strand, 42815604 - 42815679
Alignment:
Q  399 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 474  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||| || ||||||||||||||||||||||||||||    
T  42815604 ttattgggtgaaattcatgtgggtaccgcacattgaaaatggattccccataaagtggtgagacccacatgagttt 42815679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 369 - 499
Target Start/End: Complemental strand, 45508657 - 45508529
Alignment:
Q  369 atgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 468  Q
    |||||||||||||  |||||||||  | |||||||||| |||||| |||||||||  ||||||||  |||||||||||| |||||||||||||||||| |    
T  45508657 atgaacactctct--ctaacactccctttcttattgggcgaaattcatgtgggtatgacacattgagaatggatcccacgtaaagtggtgagacccacgt 45508560  T
Q  469 gagttttatccaataggacaatgagtgttag 499  Q
    | |||| | ||||||| | ||||||||||||    
T  45508559 gggtttcacccaatagaagaatgagtgttag 45508529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 407 - 469
Target Start/End: Complemental strand, 48745352 - 48745290
Alignment:
Q  407 tgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 469  Q
    |||||||||||||| |||||||||||| |||||||||||||||||| || |||||||||||||    
T  48745352 tgaaatttatgtggataccacacattgcaaatggatcccacataaattgatgagacccacatg 48745290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 418 - 483
Target Start/End: Complemental strand, 29310535 - 29310470
Alignment:
Q  418 tgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 483  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  29310535 tgggtcccacactatggaaatggatcccacataaagtggtgagacccacatgagtttcacccaata 29310470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 403 - 483
Target Start/End: Complemental strand, 32377386 - 32377306
Alignment:
Q  403 tgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 483  Q
    |||||||||||||  |||||| ||||||||| |||| |||||||||||||||||| ||||| |||| | ||||||||||||    
T  32377386 tgggtgaaatttacatgggtatcacacattgaaaatcgatcccacataaagtggtaagacctacataaattttatccaata 32377306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 375 - 483
Target Start/End: Original strand, 25695904 - 25696012
Alignment:
Q  375 actctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 474  Q
    ||||||||| ||||| ||||||| ||||||  ||||||| ||| |  ||||||| ||| |||||||| | |||||||| |||||||| ||||||||||||    
T  25695904 actctctttttaacattcaatcttttattgtatgaaattcatgcgaataccacatattagaaatggacctcacataaaatggtgagatccacatgagttt 25696003  T
Q  475 tatccaata 483  Q
     | ||||||    
T  25696004 cacccaata 25696012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 470
Target Start/End: Original strand, 16082817 - 16082870
Alignment:
Q  417 gtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 470  Q
    |||||||||||| ||||||| ||||| |||||||||| ||||||||||||||||    
T  16082817 gtgggtaccacatattggaagtggattccacataaagaggtgagacccacatga 16082870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 474
Target Start/End: Complemental strand, 46947903 - 46947819
Alignment:
Q  389 actcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 474  Q
    ||||| |||||||| |||||||| | |||||| | |||||| ||| ||||| ||||| ||||||||||||||||||||||| ||||    
T  46947903 actcactctcttatagggtgaaactcatgtggtt-ccacactttgaaaatgcatcccgcataaagtggtgagacccacatgggttt 46947819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 378 - 465
Target Start/End: Complemental strand, 49160401 - 49160314
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagaccca 465  Q
    |||| ||||||||| | | | ||||||| |||||| ||| || |||| |||||||| |||||||||||| |||||||| |||||||||    
T  49160401 ctctctctaacacttactttattattggatgaaatctatctgagtactacacattgaaaatggatcccaaataaagtgttgagaccca 49160314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 474
Target Start/End: Complemental strand, 3399124 - 3399043
Alignment:
Q  397 tcttattgggtgaaatttatgtgggtac----cacacattggaaatggatcccacataaagtggtgagacccacatgagttt 474  Q
    |||||||| |||||||| |||||||||     ||||||||| ||||  |||  |||||||||||||||||||||||||||||    
T  3399124 tcttattgagtgaaattcatgtgggtatataacacacattgaaaataaatcttacataaagtggtgagacccacatgagttt 3399043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 462
Target Start/End: Original strand, 26703465 - 26703549
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagac 462  Q
    |||| |||| |||||| ||| ||||||||||||||  |||| ||  | |||| || |||||||| ||||||||||||||||||||    
T  26703465 ctctctctagcactcactcttttattgggtgaaataaatgtaggacctacactttagaaatggaacccacataaagtggtgagac 26703549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 451
Target Start/End: Complemental strand, 32000514 - 32000434
Alignment:
Q  372 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtacca-cacattggaaatggatcccacataa 451  Q
    ||||| || ||| ||||||||| ||||||||||||||||||  |||||||| ||| ||||||| |||||||  ||||||||    
T  32000514 aacacactatttttaacactcactctcttattgggtgaaatacatgtgggttccaccacattgaaaatggacgccacataa 32000434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 410
Target Start/End: Original strand, 22159050 - 22159085
Alignment:
Q  375 actctctttctaacactcaatctcttattgggtgaa 410  Q
    ||||||||||||||||||| ||||||||||||||||    
T  22159050 actctctttctaacactcattctcttattgggtgaa 22159085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 410
Target Start/End: Original strand, 22217758 - 22217793
Alignment:
Q  375 actctctttctaacactcaatctcttattgggtgaa 410  Q
    ||||||||||||||||||| ||||||||||||||||    
T  22217758 actctctttctaacactcattctcttattgggtgaa 22217793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 462
Target Start/End: Original strand, 19840910 - 19840994
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagac 462  Q
    |||| |||| |||||| ||| ||||||||||||||  || | ||  | |||| ||||||||||| ||||||||||||||| ||||    
T  19840910 ctctctctagcactcactcttttattgggtgaaatcaatataggacctacactttggaaatggaacccacataaagtggtaagac 19840994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 462
Target Start/End: Complemental strand, 22786258 - 22786222
Alignment:
Q  426 acacattggaaatggatcccacataaagtggtgagac 462  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  22786258 acactttggaaatggaacccacataaagtggtgagac 22786222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 36738612 - 36738568
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggt 422  Q
    |||||||||||||||| |||| |||||||||||| | ||||||||    
T  36738612 ctctttctaacactcactctcctattgggtgaaactcatgtgggt 36738568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 458
Target Start/End: Complemental strand, 45909611 - 45909531
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 458  Q
    |||| ||||||||||| ||| ||||||||| ||||  |||| ||  | |||  ||||||||||| ||||||||||||||||    
T  45909611 ctctctctaacactcactcttttattgggtaaaatcaatgtaggacctacaatttggaaatggaacccacataaagtggtg 45909531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 378 - 499
Target Start/End: Complemental strand, 33440657 - 33440536
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||| ||||||| ||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  33440657 ctctctctaacattcactctcttattgggtgaaagtcatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcac 33440558  T
Q  478 ccaataggacaatgagtgttag 499  Q
    | ||||||| | ||||||||||    
T  33440557 ctaataggagagtgagtgttag 33440536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 377 - 533
Target Start/End: Original strand, 6580856 - 6581007
Alignment:
Q  377 tctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttta 476  Q
    ||||||||||||| |||  |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  6580856 tctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattggaaat-gatcccacataaagtggtgagacccacatgagtttca 6580954  T
Q  477 tccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataac 533  Q
     ||||||| |   ||||||||||    ||| ||||||||||||||||| ||| ||||    
T  6580955 cccaatagaagggtgagtgttag----agagagtgctagaaagagagtgttcttaac 6581007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 378 - 474
Target Start/End: Original strand, 28700581 - 28700677
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 474  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||    
T  28700581 ctctctctaacactcactctcttattgggttaaatttatgtgggtaccacatattggaaatgaatcccacataaagtggtgagactcacatgagttt 28700677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 369 - 486
Target Start/End: Complemental strand, 45058071 - 45057954
Alignment:
Q  369 atgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 468  Q
    ||||||||| ||| ||||||||||| ||||||||||| ||||| ||||||| ||  ||||| |||||||||||||||||||||||||  |||||||||||    
T  45058071 atgaacactttctctctaacactcactctcttattggttgaaacttatgtgagtctcacactttggaaatggatcccacataaagtgacgagacccacat 45057972  T
Q  469 gagttttatccaatagga 486  Q
     ||||| | |||||||||    
T  45057971 aagtttcacccaatagga 45057954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 378 - 483
Target Start/End: Complemental strand, 30085531 - 30085426
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||| ||||||||| | |||||||||| |||||||| ||||| ||  ||||  ||||||||||||||||||||||||||||||| |||||||||||| |     
T  30085531 ctctctctaacacttactctcttattgagtgaaattcatgtgagtgtcacatgttggaaatggatcccacataaagtggtgagatccacatgagtttcac 30085432  T
Q  478 ccaata 483  Q
    ||||||    
T  30085431 ccaata 30085426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 499
Target Start/End: Complemental strand, 1311593 - 1311472
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    ||||||||||||||||   ||||||| ||||| ||  ||||||||  ||||| |||||||||||||||||||||| ||||||||||| |||| |||| |     
T  1311593 ctctttctaacactcacattcttatttggtgagatccatgtgggtttcacactttggaaatggatcccacataaaatggtgagacccgcatgggtttcac 1311494  T
Q  478 ccaataggacaatgagtgttag 499  Q
    |||||| || || |||||||||    
T  1311493 ccaataagagaaggagtgttag 1311472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 395 - 474
Target Start/End: Original strand, 33133475 - 33133554
Alignment:
Q  395 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 474  Q
    ||||||||||| ||||||| ||||  ||||||||| |||||||||| ||| ||||||||||||||| |||||||||||||    
T  33133475 tctcttattggatgaaattcatgtaagtaccacactttggaaatgggtccgacataaagtggtgaggcccacatgagttt 33133554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 469
Target Start/End: Complemental strand, 35188506 - 35188416
Alignment:
Q  379 tctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 469  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||  ||||| |||||||| | |||||| |||||||||| || |||||||    
T  35188506 tctttctaacactcactctcttatagggtgaaattaatgtgggtctcacactttggaaataggtcccacgtaaagtggtgggatccacatg 35188416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 383 - 476
Target Start/End: Original strand, 12212155 - 12212248
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttta 476  Q
    ||||||| ||| ||| || |||||||||||  |||||||| | |||| |||||||||| |||||||||||||||||||| ||| |||| |||||    
T  12212155 tctaacattcactcttttcttgggtgaaatcaatgtgggtcctacactttggaaatgggtcccacataaagtggtgagatccatatgaatttta 12212248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 383 - 476
Target Start/End: Original strand, 12456583 - 12456676
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttta 476  Q
    ||||||| ||| ||| || |||||||||||  |||||||| | |||| |||||||||| |||||||||||||||||||| ||| |||| |||||    
T  12456583 tctaacattcactcttttcttgggtgaaatcaatgtgggtcctacactttggaaatgggtcccacataaagtggtgagatccatatgaatttta 12456676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 443 - 524
Target Start/End: Original strand, 16896336 - 16896413
Alignment:
Q  443 cccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgttagttaaagaaagtgctagaaagagagt 524  Q
    |||||||||||||||||||||||||||||||| | | ||||| | ||||||||||||    ||| |||||||||||||||||    
T  16896336 cccacataaagtggtgagacccacatgagtttcaccaaatagaaaaatgagtgttag----agagagtgctagaaagagagt 16896413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 14022030 - 14022124
Alignment:
Q  386 aacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatcca 480  Q
    |||| ||| ||||||||| ||||||||| |||| ||| ||| || ||||||| |||||||||||||| ||| |||||||||| || ||| |||||    
T  14022030 aacattcactctcttattcggtgaaattaatgtaggtcccaaactttggaaacggatcccacataaactggcgagacccacacgaatttcatcca 14022124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 483
Target Start/End: Original strand, 13990490 - 13990583
Alignment:
Q  390 ctcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 483  Q
    |||| ||||||||| ||||||| |||||| ||  |||||  ||| |||| | ||| ||||||||||||||||||||||||||||| | ||||||    
T  13990490 ctcattctcttatttggtgaaacttatgtaggatccacaatttgaaaataggtcctacataaagtggtgagacccacatgagtttcacccaata 13990583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 459
Target Start/End: Complemental strand, 31703882 - 31703822
Alignment:
Q  399 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtga 459  Q
    ||||||| | ||||| |||||| || ||||| |||||||||||||||||||||||||||||    
T  31703882 ttattggttaaaattaatgtggatatcacactttggaaatggatcccacataaagtggtga 31703822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 483
Target Start/End: Original strand, 34434946 - 34435046
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaat 482  Q
    ||||||| ||| ||||||||||| |||||  |||| | || |||||| ||||||||| |||||| |||||| ||||||| ||||||| |||| | |||||    
T  34434946 tctaacattcactctcttattggatgaaacctatgcgagtcccacaccttggaaatgcatcccatataaagcggtgagatccacatgggtttcacccaat 34435045  T
Q  483 a 483  Q
    |    
T  34435046 a 34435046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 474
Target Start/End: Original strand, 31024183 - 31024222
Alignment:
Q  435 aaatggatcccacataaagtggtgagacccacatgagttt 474  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  31024183 aaatgaatcccacataaagtggtgagacccacatgagttt 31024222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 455
Target Start/End: Original strand, 38695671 - 38695754
Alignment:
Q  372 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtg 455  Q
    |||||||||||| ||||||||| ||||||||||| ||||||| |||||| |  || || || |||||||||||| ||| |||||    
T  38695671 aacactctctttataacactcactctcttattggatgaaattaatgtggatctcatactttagaaatggatcccgcatgaagtg 38695754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 469
Target Start/End: Original strand, 902419 - 902489
Alignment:
Q  399 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 469  Q
    ||||||||||||||  |||||| | | || | |||||||||| ||||||||||||||||| ||||||||||    
T  902419 ttattgggtgaaatcaatgtggatcctacgctttggaaatgggtcccacataaagtggtgggacccacatg 902489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 468
Target Start/End: Original strand, 16441832 - 16441922
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 468  Q
    |||| ||||||||||| ||| |||||| ||||||| ||||| ||| ||| |  | ||||||||||||||||||| ||| || |||||||||    
T  16441832 ctctctctaacactcactcttttattgagtgaaatctatgtaggttccaaaattcggaaatggatcccacataaggtgatgggacccacat 16441922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 478
Target Start/End: Complemental strand, 4480369 - 4480286
Alignment:
Q  395 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatc 478  Q
    ||||||||| | |||||| ||  ||| |||||||| ||  ||||| ||||||| |||||||||||||| ||||||| |||||||    
T  4480369 tctcttattagatgaaatctacatggataccacactttaaaaatgaatcccacttaaagtggtgagacacacatgaattttatc 4480286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 483
Target Start/End: Complemental strand, 34172542 - 34172507
Alignment:
Q  448 ataaagtggtgagacccacatgagttttatccaata 483  Q
    ||||||||||||||| ||||||||||||||||||||    
T  34172542 ataaagtggtgagactcacatgagttttatccaata 34172507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 483
Target Start/End: Complemental strand, 6387716 - 6387611
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||| ||||||||||| ||||||||||||| |||   ||||||||   | || ||||||||||| |||||||||| ||||| |||  ||||   ||||||    
T  6387716 ctctctctaacactcattctcttattgggttaaaacaatgtgggtcgtatactttggaaatggaacccacataaaatggtgggacatacattgattttat 6387617  T
Q  478 ccaata 483  Q
    ||||||    
T  6387616 ccaata 6387611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 469
Target Start/End: Original strand, 35494150 - 35494246
Alignment:
Q  372 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 469  Q
    ||||||||||||| |||||||| |||| |||||| | ||||  ||||| ||  ||||| || ||||||| ||||||||||| ||||| ||| ||||||    
T  35494150 aacactctctttccaacactcactctcctattggataaaatcgatgtgagtctcacac-tttgaaatgggtcccacataaaatggtgggacacacatg 35494246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 14195233 - 14195298
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaattta----tgtgggtaccacacattggaaatg 439  Q
    |||| ||||||||||| ||||||||||| ||||| | |    ||||||||||||||||||||||||    
T  14195233 ctctctctaacactcattctcttattggatgaaagtcatgcctgtgggtaccacacattggaaatg 14195298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 443
Target Start/End: Original strand, 16895274 - 16895334
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatc 443  Q
    ||||||||||| ||||||||||  | ||||| |||||| ||||||| |||| |||||||||    
T  16895274 tctaacactcactctcttattgaatcaaattcatgtggataccacatattgaaaatggatc 16895334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 458
Target Start/End: Complemental strand, 33417837 - 33417757
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 458  Q
    |||| |||| |||||| ||| |||||| |||||||| |||| ||  | |||| ||||||||| | ||||||||||||||||    
T  33417837 ctctctctagcactcactcttttattgagtgaaattaatgtaggacctacactttggaaatgaaacccacataaagtggtg 33417757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 378 - 524
Target Start/End: Original strand, 32439504 - 32439646
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |||| ||    
T  32439504 ctctctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattggaaatggatcccacataaagcggtgagccccacttgggtttcat 32439603  T
Q  478 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagt 524  Q
    ||||||| | ||| ||||||||    ||| |||||||||||||||||    
T  32439604 ccaatagaaaaataagtgttag----agagagtgctagaaagagagt 32439646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 378 - 486
Target Start/End: Complemental strand, 7447718 - 7447611
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||| ||||||| ||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |     
T  7447718 ctctctctaaca-tcactctcttgttgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaagtggtgagacccacatgagcttcac 7447620  T
Q  478 ccaatagga 486  Q
    |||||||||    
T  7447619 ccaatagga 7447611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 396 - 495
Target Start/End: Complemental strand, 17221646 - 17221547
Alignment:
Q  396 ctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtg 495  Q
    |||||||||| ||||||| |||| ||||||| |||||| |||| ||||||||||||||||||||| ||||| ||| ||| | | |||| || ||||||||    
T  17221646 ctcttattggatgaaattcatgtaggtaccatacattgaaaatagatcccacataaagtggtgagtcccacttgaatttcacctaataagagaatgagtg 17221547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 498
Target Start/End: Complemental strand, 30480018 - 30479895
Alignment:
Q  376 ctctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaa-tggatcccacataaagtggtgagacccacatgagttt 474  Q
    |||||||||||| ||| | ||| ||||| ||| | ||| ||||||||| ||||| || || | |||||||||||||||||||| ||||||||||  ||||    
T  30480018 ctctctttctaatacttactcttttatttggtaatattcatgtgggtatcacacttttgatactggatcccacataaagtggtaagacccacatatgttt 30479919  T
Q  475 tatccaataggacaatgagtgtta 498  Q
    ||  |||||||| ||||| |||||    
T  30479918 tactcaataggagaatgaatgtta 30479895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 480
Target Start/End: Original strand, 28030569 - 28030612
Alignment:
Q  437 atggatcccacataaagtggtgagacccacatgagttttatcca 480  Q
    |||||||||||||||||| |||||||||||||| |||| |||||    
T  28030569 atggatcccacataaagttgtgagacccacatgggtttcatcca 28030612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 467
Target Start/End: Complemental strand, 28030726 - 28030642
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccaca 467  Q
    ||||||| ||| | ||||||| |||| |||  |||||||||| |||  ||| ||||||||| ||||||| || ||||||||||||    
T  28030726 tctaacattcactttcttattaggtgtaatccatgtgggtacaacattttgaaaatggatctcacataatgttgtgagacccaca 28030642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 378 - 524
Target Start/End: Original strand, 30892135 - 30892277
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||||||||||||||| ||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||| || |||||||| |     
T  30892135 ctctttctaacactcactctcttattcggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgagactcatatgagtttcac 30892234  T
Q  478 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagt 524  Q
    ||||||||| | ||||||||||    ||| |||||||||||||||||    
T  30892235 ccaataggagagtgagtgttag----agagagtgctagaaagagagt 30892277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 373 - 499
Target Start/End: Complemental strand, 18237294 - 18237168
Alignment:
Q  373 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 472  Q
    ||||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| |    
T  18237294 acactctctttctaacactcactcttttattgggtgaaattcatgtgggtatcacacattgaaaatagatcccacataaagtggtgagacccacatgaat 18237195  T
Q  473 tttatccaataggacaatgagtgttag 499  Q
    || | |||| ||||   ||||||||||    
T  18237194 ttcacccaagaggaaggtgagtgttag 18237168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 373 - 531
Target Start/End: Complemental strand, 17190769 - 17190613
Alignment:
Q  373 acactctctttctaacactcaat--ctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 470  Q
    ||||| ||||||||||||||  |  ||||| |||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  17190769 acactttctttctaacactctctttctcttgttgggtgaaattcatgcgggtaccacacattagaaatggatcccacataaagtggtgagacccacataa 17190670  T
Q  471 gttttatccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcata 531  Q
    |||| | | ||||||| | ||||||||||    ||| ||||||||||||||||| ||||||    
T  17190669 gtttcacctaataggaaagtgagtgttag----agagagtgctagaaagagagtgttcata 17190613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 386 - 499
Target Start/End: Complemental strand, 5990664 - 5990551
Alignment:
Q  386 aacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagg 485  Q
    |||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  ||| |||||||| |    
T  5990664 aacactcactcttttattgggtgaaattcatgtgggtaccatacattggaaatggatcccacataaaatggtgagacccacatgtatttaatccaatatg 5990565  T
Q  486 acaatgagtgttag 499  Q
    | | ||||||||||    
T  5990564 agagtgagtgttag 5990551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 374 - 483
Target Start/End: Complemental strand, 32153850 - 32153741
Alignment:
Q  374 cactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtt 473  Q
    |||||||||||||||||||| |||||||||||||||||   |||||| | |||||| |||||||||||||||||||||||||||||||||||||||  ||    
T  32153850 cactctctttctaacactcactctcttattgggtgaaacccatgtggatcccacactttggaaatggatcccacataaagtggtgagacccacatggatt 32153751  T
Q  474 ttatccaata 483  Q
    |||| |||||    
T  32153750 ttattcaata 32153741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 378 - 499
Target Start/End: Original strand, 42958466 - 42958587
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||| ||||||| ||| | | ||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  42958466 ctctctctaacagtcacttttttatttggtgaaattcatgtgggtaccacgcattggaaatggatcccacataaagtggtgagacccgcatgagtttcat 42958565  T
Q  478 ccaataggacaatgagtgttag 499  Q
    ||||||| | | ||||||||||    
T  42958566 ccaatagaaaagtgagtgttag 42958587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 383 - 469
Target Start/End: Complemental strand, 41020326 - 41020240
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 469  Q
    |||||||| || |||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  41020326 tctaacacccactctcttattgggtgaaatatatgtgggtaccacatattggaaatgaatcccacataaagtggtgagacccacatg 41020240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 369 - 469
Target Start/End: Complemental strand, 34321022 - 34320922
Alignment:
Q  369 atgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 468  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||  |||||| ||||| || ||| |||| ||||||||||||||||||||||| |||||    
T  34321022 atgaacactctctttttaacactcattctcttgttgggtgaaatccatgtggataccatactttgaaaatagatcccacataaagtggtgagactcacat 34320923  T
Q  469 g 469  Q
    |    
T  34320922 g 34320922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 474
Target Start/End: Complemental strand, 28436556 - 28436460
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 474  Q
    |||||||||||| ||| ||||| ||||||||||||| |||||| |||||||| || ||||||||| ||  |||||||||||||| | ||| ||||||    
T  28436556 ctctttctaacattcactctctaattgggtgaaattcatgtggttaccacacttttgaaatggattccgtataaagtggtgagatctacacgagttt 28436460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 373 - 460
Target Start/End: Complemental strand, 10393878 - 10393791
Alignment:
Q  373 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgag 460  Q
    ||||||| |||||||||||   | ||||||||||||||||| |||||||||| |||||||| ||||  |||||||||||||| |||||    
T  10393878 acactctatttctaacacttgctttcttattgggtgaaattcatgtgggtactacacattgaaaataaatcccacataaagtagtgag 10393791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 373 - 457
Target Start/End: Original strand, 27726818 - 27726902
Alignment:
Q  373 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggt 457  Q
    ||||||||||||  ||||||| ||| ||||||||||||||| |||||||| | |||| |||||||||| ||||||  ||||||||    
T  27726818 acactctctttcctacactcactcttttattgggtgaaattaatgtgggtcctacactttggaaatgggtcccactcaaagtggt 27726902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 486
Target Start/End: Original strand, 2976559 - 2976650
Alignment:
Q  395 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagga 486  Q
    ||||||||||||| ||||| |||||| ||| | ||||||||||| ||||  | ||||| | || ||||||||||| ||||||||||||||||    
T  2976559 tctcttattgggtaaaattcatgtggatactatacattggaaattgatctaatataaaattgtaagacccacatgggttttatccaatagga 2976650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 499
Target Start/End: Complemental strand, 40699622 - 40699511
Alignment:
Q  389 actcaatctcttattggg-tgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggac 487  Q
    ||||| |||||||||||| |||||   ||||||||  || || |||||||||||||||| ||||||| |||||||||||||| |||| | |||||| ||     
T  40699622 actcagtctcttattggggtgaaacccatgtgggtctcatactttggaaatggatcccaaataaagtagtgagacccacatgggtttcacccaataagaa 40699523  T
Q  488 aatgagtgttag 499  Q
    | ||||||||||    
T  40699522 agtgagtgttag 40699511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 469
Target Start/End: Complemental strand, 41746230 - 41746132
Alignment:
Q  369 atgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 468  Q
    ||||||| ||||||||||||||||| ||| |||||| |||||||| |  || ||  ||| | ||||||||  |||||||||||||||||||||||| |||    
T  41746230 atgaacattctctttctaacactcactcttttattgagtgaaattca--tgagtctcacgctttggaaatccatcccacataaagtggtgagacccgcat 41746133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 499
Target Start/End: Original strand, 26435319 - 26435420
Alignment:
Q  397 tcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgt 496  Q
    ||||||||| ||||||| ||||||| ||| ||| |||||||  | || |||||||||||||||||||||| | | ||| | ||||||||| | |||||||    
T  26435319 tcttattggatgaaattcatgtgggcaccgcactttggaaagag-tctcacataaagtggtgagacccacgtaaatttcacccaataggagagtgagtgt 26435417  T
Q  497 tag 499  Q
    |||    
T  26435418 tag 26435420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 422
Target Start/End: Complemental strand, 26435432 - 26435382
Alignment:
Q  372 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggt 422  Q
    |||||||| ||||||||||||| |||| |||||||||||||||| ||||||    
T  26435432 aacactctttttctaacactcactctcctattgggtgaaatttacgtgggt 26435382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 371 - 452
Target Start/End: Original strand, 16875283 - 16875364
Alignment:
Q  371 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaa 452  Q
    |||||||||||||| | ||||||| |||||||||||| ||||| ||| |||| |||| | |||||  ||| |||||||||||    
T  16875283 gaacactctctttccagcactcaacctcttattgggtaaaattaatgcgggtcccactctttggacgtgggtcccacataaa 16875364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 454
Target Start/End: Original strand, 2406004 - 2406072
Alignment:
Q  386 aacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagt 454  Q
    |||||||| ||| |||||||||||||| ||||||||| |||||| ||| | ||||  ||||||||||||    
T  2406004 aacactcattcttttattgggtgaaatctatgtgggttccacactttgaagatggcacccacataaagt 2406072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 483
Target Start/End: Original strand, 34457661 - 34457748
Alignment:
Q  395 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 483  Q
    |||||| ||| || ||||||||||||||| | ||  ||  |||||||||||||||||||| |||||| |||| | ||||||||||||||    
T  34457661 tctcttgttgagtaaaatttatgtgggtatcgcattttaaaaatggatcccacataaagttgtgagatccacct-agttttatccaata 34457748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 40699498 - 40699538
Alignment:
Q  371 gaacactctctttctaacactcaatctcttattgggtgaaa 411  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  40699498 gaacactctctttctaacactcactttcttattgggtgaaa 40699538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 462
Target Start/End: Complemental strand, 26072253 - 26072174
Alignment:
Q  383 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagac 462  Q
    |||| |||||| ||| |||||||||||||   |||||||  | |||| ||||||||| || |||||||||||||||||||    
T  26072253 tctagcactcactcttttattgggtgaaaacaatgtgggacctacactttggaaatgaattccacataaagtggtgagac 26072174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 483
Target Start/End: Complemental strand, 1249102 - 1249028
Alignment:
Q  409 aaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 483  Q
    |||||||||||| ||| |||| ||||||||||| ||||  ||||||| |||||| ||||||  ||| ||||||||    
T  1249102 aaatttatgtggttacgacactttggaaatggaccccatgtaaagtgatgagactcacatggatttcatccaata 1249028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 461
Target Start/End: Complemental strand, 6198663 - 6198601
Alignment:
Q  399 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgaga 461  Q
    ||||||||||||||  |||||||| |||||| ||| |||||| | ||||||||||| ||||||    
T  6198663 ttattgggtgaaatcgatgtgggtcccacactttgaaaatgggttccacataaagtcgtgaga 6198601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 458
Target Start/End: Original strand, 42224626 - 42224696
Alignment:
Q  388 cactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 458  Q
    |||||| ||| ||||||||||||||  |||| ||  | |||| ||||||||||| ||||||||||||||||    
T  42224626 cactcactcttttattgggtgaaatcaatgtaggacctacactttggaaatggaacccacataaagtggtg 42224696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 422
Target Start/End: Original strand, 18237153 - 18237206
Alignment:
Q  369 atgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggt 422  Q
    |||||||||||||||||||||||||   || | |||||||||||| ||||||||    
T  18237153 atgaacactctctttctaacactcaccttcctcttgggtgaaattcatgtgggt 18237206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 22524436 - 22524395
Alignment:
Q  381 tttctaacactcaatctcttattgggtgaaatttatgtgggt 422  Q
    ||||||||||||| ||||||||||||||||||  ||||||||    
T  22524436 tttctaacactcactctcttattgggtgaaatacatgtgggt 22524395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 483
Target Start/End: Complemental strand, 9693485 - 9693437
Alignment:
Q  435 aaatggatcccacataaagtggtgagacccacatgagttttatccaata 483  Q
    |||| |||||||||||| |||||||||||| || ||||||| |||||||    
T  9693485 aaatagatcccacataatgtggtgagaccctcacgagttttgtccaata 9693437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 474
Target Start/End: Original strand, 38732427 - 38732504
Alignment:
Q  395 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 474  Q
    |||||||||| ||||||||||||||| |||||||  ||  |||| | ||  ||||||||||||||||  |||||||||||    
T  38732427 tctcttattgagtgaaatttatgtggataccacaatttaaaaataggtctaacataaagtggtgaga--cacatgagttt 38732504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 386 - 499
Target Start/End: Complemental strand, 48543288 - 48543175
Alignment:
Q  386 aacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagg 485  Q
    |||||||| ||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||||    
T  48543288 aacactcactctcttattgggtgaaattcatgtgggtagcatacattggaaatggaccccacataaaatggtgagacccacatgtgtttaatccaatagg 48543189  T
Q  486 acaatgagtgttag 499  Q
    | | ||||||||||    
T  48543188 agagtgagtgttag 48543175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 378 - 499
Target Start/End: Complemental strand, 54187082 - 54186961
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||| ||||||||||| |||||||||||||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||| |     
T  54187082 ctctctctaacactcactctcttattgggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgagattcacatgagtttcac 54186983  T
Q  478 ccaataggacaatgagtgttag 499  Q
    ||||||||| | ||| ||||||    
T  54186982 ccaataggagagtgaatgttag 54186961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 378 - 533
Target Start/End: Original strand, 29235675 - 29235828
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||| ||||||||||| ||||||||||||||||||| ||| || ||||||||||| ||||||||||| ||||||||||||||||| || |||||||| |     
T  29235675 ctctctctaacactcactctcttattgggtgaaattcatgaggataccacacattagaaatggatccaacataaagtggtgagactcatatgagtttcac 29235774  T
Q  478 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataac 533  Q
    ||||||||| | ||| |||  |||| |||  |||||||||||||||| ||| ||||    
T  29235775 ccaataggaaagtgaatgt--gttagagagggtgctagaaagagagtgttcctaac 29235828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 378 - 484
Target Start/End: Original strand, 13639430 - 13639536
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||| ||||||| ||| ||| ||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |     
T  13639430 ctctctctaacagtcactcttttattggatgaaattcatgtgggtatcacacattggaaatggatctcacataaagtggtgagacccacatgagtttcac 13639529  T
Q  478 ccaatag 484  Q
    |||||||    
T  13639530 ccaatag 13639536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 378 - 511
Target Start/End: Original strand, 38602836 - 38602967
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 477  Q
    |||| ||||| ||||| ||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| |     
T  38602836 ctctctctaatactcactcttttattcggtaaaatttatgtgggtaccacacattgaaaatggatcccacataaagtagtgagactcacatgagtttcac 38602935  T
Q  478 ccaataggacaatgagtgttagttaaagaaagtg 511  Q
    ||||||||| | |||||| |||  ||||||||||    
T  38602936 ccaataggagagtgagtgctag--aaagaaagtg 38602967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 358 - 486
Target Start/End: Complemental strand, 46893517 - 46893391
Alignment:
Q  358 tgaggagtatcatgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggt 457  Q
    |||||||| | ||| |||||||||  |||||||||| |||||||||   ||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  46893517 tgaggagtgttatggacactctct--ctaacactcactctcttattaaatgaaattcatgtgggtaacacacattggaaatggatcccacataaagtggt 46893420  T
Q  458 gagacccacatgagttttatccaatagga 486  Q
    |||||  | |||||||| |||||| ||||    
T  46893419 gagacgaagatgagtttcatccaacagga 46893391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 395 - 499
Target Start/End: Complemental strand, 20909429 - 20909325
Alignment:
Q  395 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagt 494  Q
    ||||||||||||||||||| | ||||| |||||  |||| |||||||||||||||||||||||||||||||||||||||| | |||| |||| | | |||    
T  20909429 tctcttattgggtgaaattcaggtgggcaccacctattgaaaatggatcccacataaagtggtgagacccacatgagtttcacccaaaaggagagtaagt 20909330  T
Q  495 gttag 499  Q
    |||||    
T  20909329 gttag 20909325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 377 - 483
Target Start/End: Complemental strand, 28215881 - 28215775
Alignment:
Q  377 tctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttta 476  Q
    |||||||||||||| || ||||||||||||||||| | | ||||||  ||||| ||||||||||| ||| ||||||||| |||||||||||||||||| |    
T  28215881 tctctttctaacacccactctcttattgggtgaaactcacgtgggtctcacactttggaaatggaccccgcataaagtgatgagacccacatgagtttca 28215782  T
Q  477 tccaata 483  Q
     ||||||    
T  28215781 cccaata 28215775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 373 - 499
Target Start/End: Original strand, 50320436 - 50320561
Alignment:
Q  373 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 472  Q
    ||||||||||||||||| | | |||||||||||||||| || || |||||| |||||||| ||||| ||||||||||||| ||||||||| || ||||||    
T  50320436 acactctctttctaacatttattctcttattgggtgaagttcatatgggtatcacacattagaaat-gatcccacataaaatggtgagactcatatgagt 50320534  T
Q  473 tttatccaataggacaatgagtgttag 499  Q
    || || |||||| | | ||||||||||    
T  50320535 ttcattcaatagaagagtgagtgttag 50320561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 378 - 469
Target Start/End: Original strand, 42780698 - 42780789
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 469  Q
    |||| ||||||||||| ||||||||||| ||||||  |||| |||  ||||| | | |||||||||||||||||||||||||||||||||||    
T  42780698 ctctctctaacactcattctcttattggatgaaatccatgtaggtctcacacttagaaaatggatcccacataaagtggtgagacccacatg 42780789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 470
Target Start/End: Complemental strand, 46156780 - 46156684
Alignment:
Q  372 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 470  Q
    ||||||||||||  |||||||| ||| ||||||||||||||   ||||||  | |||||| ||||| || |||||||||||||||||||||||| ||||    
T  46156780 aacactctcttt--aacactcactcttttattgggtgaaatcgttgtggggcctacacataggaaaagggtcccacataaagtggtgagacccatatga 46156684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 373 - 438
Target Start/End: Original strand, 45800738 - 45800801
Alignment:
Q  373 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaat 438  Q
    ||||||| ||||||||||||| ||| |||||||||||||  ||||||||||||||||||| |||||    
T  45800738 acactctgtttctaacactcattcttttattgggtgaaa--tatgtgggtaccacacattagaaat 45800801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 458
Target Start/End: Complemental strand, 27243200 - 27243120
Alignment:
Q  378 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 458  Q
    |||||||||| ||||| ||||| ||||||| ||||  ||||||||   |||| ||||||||||| ||||||||||||||||    
T  27243200 ctctttctaatactcactctctcattgggttaaatcaatgtgggtcatacactttggaaatggaacccacataaagtggtg 27243120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 481
Target Start/End: Complemental strand, 26223256 - 26223190
Alignment:
Q  415 atgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaa 481  Q
    ||||||||| || | |||| ||||||||||||||||||||| ||||| |||||||| ||| ||||||    
T  26223256 atgtgggtaacatatattgaaaatggatcccacataaagtgatgagatccacatgaatttcatccaa 26223190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 460
Target Start/End: Complemental strand, 357894 - 357833
Alignment:
Q  399 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgag 460  Q
    ||||||| ||||||  |||| ||||| |||| ||||||||||| ||||||||||||||||||    
T  357894 ttattggatgaaatcaatgtaggtactacactttggaaatggaacccacataaagtggtgag 357833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 3770541 - 3770586
Alignment:
Q  375 actctctttctaacactcaatctcttattgggtgaaatttatgtgg 420  Q
    |||||||||| |||||||| ||||||||||||||||||| ||||||    
T  3770541 actctctttccaacactcactctcttattgggtgaaattcatgtgg 3770586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 499
Target Start/End: Original strand, 54140813 - 54140882
Alignment:
Q  430 attggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgttag 499  Q
    ||||||||||||||||||||||||||||||||| | ||||| ||| | | |||| || | ||||||||||    
T  54140813 attggaaatggatcccacataaagtggtgagactcgcatgaatttcacctaataagagagtgagtgttag 54140882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 458
Target Start/End: Original strand, 50661541 - 50661627
Alignment:
Q  372 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 458  Q
    ||||||||||||  |||||||  ||| ||||||||| ||||  ||||||||   |||  ||||||||||| ||||||||||||||||    
T  50661541 aacactctcttttgaacactctttcttttattgggttaaatcaatgtgggtcatacattttggaaatggaacccacataaagtggtg 50661627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 483
Target Start/End: Complemental strand, 1741372 - 1741335
Alignment:
Q  446 acataaagtggtgagacccacatgagttttatccaata 483  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  1741372 acataaagtggtgagacccacatgagtttaatctaata 1741335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 461
Target Start/End: Original strand, 1717764 - 1717828
Alignment:
Q  397 tcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgaga 461  Q
    |||||||  |||||||| |||||| || || | ||||||||||||||  ||||||||||||||||    
T  1717764 tcttatttagtgaaattcatgtggatatcaaatattggaaatggatcatacataaagtggtgaga 1717828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 395 - 474
Target Start/End: Original strand, 710 - 789
Alignment:
Q  395 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 474  Q
    |||||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  710 tctcttattgagtgaaattcatgtggataccacacattgaaaatggatcccacataaagtggtgagacccacatgagttt 789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 371 - 498
Target Start/End: Complemental strand, 28458 - 28331
Alignment:
Q  371 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 470  Q
    |||||| ||||||| ||||| || ||||||||||||||||||  |||||||| |||||| ||| |||||| ||||||||||| || || |||||||||      
T  28458 gaacacactctttccaacacccactctcttattgggtgaaatcaatgtgggtcccacactttgaaaatgggtcccacataaattgatgggacccacattg 28359  T
Q  471 gttttatccaataggacaatgagtgtta 498  Q
     ||| |||||||| || | |||||||||    
T  28358 atttcatccaataagaaagtgagtgtta 28331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 17925 - 17985
Alignment:
Q  407 tgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 468  Q
    |||||||||||| ||||||| || ||||||| |||| |||||||||||||| | ||||||||    
T  17925 tgaaatttatgtaggtaccaaactttggaaagggat-ccacataaagtggttaaacccacat 17985  T

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