View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18591_low_23 (Length: 213)
Name: NF18591_low_23
Description: NF18591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18591_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 9711491 - 9711668
Alignment:
| Q |
22 |
aagggatgctccaaatgaagagctctccattgttgtaccctacaaccactttgcttccaaaaggacacacccaacatgcacaagacactttctttgcttc |
121 |
Q |
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| T |
9711491 |
aagggatgctccaaatgaagagctctccattgttgtaccctacaaccactttgcttccaaaaggacacacccaacatgcacaagacactttctttgcttc |
9711590 |
T |
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| Q |
122 |
attatgcagtggctgctgtgacacatttccaccagttctgaaaatgcatttgctttctctaatatcccatagtattat |
199 |
Q |
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| T |
9711591 |
attatgcagtggctgctgtgacacatttccaccagttctgaaaatgcatttgctttctctaatatcccataatattat |
9711668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 9723610 - 9723689
Alignment:
| Q |
100 |
cacaagacactttctttgcttcattatgcagtggctgctgtgacacatttccaccagttctgaaaatgcatttgctttctctaat |
184 |
Q |
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| T |
9723610 |
cacaagacactttctttgtttcattatgc-gtggctg---tgacacatttcc-ccagttctcaaaatgcatttgctttctctaat |
9723689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 31107030 - 31106898
Alignment:
| Q |
30 |
ctccaaatgaagagctctccattgttgtaccctacaaccactttgcttccaaaaggacacacccaacatgcacaagacactttctttgcttcattatgca |
129 |
Q |
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| T |
31107030 |
ctccaaatgaagatctctccgttgctgtatccaacaactactttacttccaaaaggacatgcccaacatgcagaagtcactttctttgtttcattatgca |
31106931 |
T |
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| Q |
130 |
gtggctgctgtgacacatttccaccagttctgaaaa |
165 |
Q |
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| T |
31106930 |
gtgactgc---gacatatttccaccagttctgaaaa |
31106898 |
T |
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