View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18591_low_4 (Length: 472)
Name: NF18591_low_4
Description: NF18591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18591_low_4 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 227 - 472
Target Start/End: Original strand, 56165181 - 56165426
Alignment:
| Q |
227 |
attctaatttttgcgaagttattgaatggataataagtacagaattttcaatattacaggcctggtttcattcctaccagcattaggaccatttggattg |
326 |
Q |
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| T |
56165181 |
attctaatttttgcgaagttattgaatggataataagtacagaattttcaatattacaggcctggtttcattcctaccagcattaggaccatttggattg |
56165280 |
T |
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| Q |
327 |
gtgtgactgctgcgattcctcttgttttgttcgtgcggttaagtgattgacagagcttgcagcagaattttgggttcaatatagtaaggaaagagattta |
426 |
Q |
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| T |
56165281 |
gtgtgactgctgcgattcctcttgttttgttcgtgcggttaagcgattgacagagcttgcagcagaattttgggttcaatatagtaaggaaagagattta |
56165380 |
T |
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| Q |
427 |
attaagaagtggaactttggaggttaatagcatattggtttacacc |
472 |
Q |
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| T |
56165381 |
attaagaagtggaactttggaggttaatagcatattggtttacacc |
56165426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 145 - 472
Target Start/End: Original strand, 44262575 - 44262890
Alignment:
| Q |
145 |
ttggtttgttatgttactaattggtgggatgtatgtgtat-tttaagtcccatttcagttatcggatggattggaatatgattattctaatttttgcga- |
242 |
Q |
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| T |
44262575 |
ttggtttgttatgccattaattgatgggatgtatgtgtatctttaagtcccatttcagttatcggatggataggaatagaattactctaatcttcgcaag |
44262674 |
T |
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| Q |
243 |
-agttattgaatggataataagtacagaattttcaatattacaggcctggtttcattcctaccagcattaggaccatttggattggtgtgactgctgcga |
341 |
Q |
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| T |
44262675 |
tagttatcgaatggataa---gtatagaat-----acat----ggcctgctttcattcctacaagcattaggacagtctggtttggcatgactactgcaa |
44262762 |
T |
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| Q |
342 |
ttcctcttgttttgttcgtgcggttaagtgattgacagagcttgcagcagaattttgggttcaatatagtaaggaaagagatttaattaagaagtggaac |
441 |
Q |
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| T |
44262763 |
ttgttgttgttctgtttgtgtagttaagcgatttacagagcttgcagcagagttttgggttcaatatagtaaggaaggagat----ctaaggagaggagc |
44262858 |
T |
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| Q |
442 |
tttggaggtt-aatagcatattggtttacacc |
472 |
Q |
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| T |
44262859 |
tttggaggttaaatagcatattggtttacacc |
44262890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 44259653 - 44259687
Alignment:
| Q |
379 |
gagcttgcagcagaattttgggttcaatatagtaa |
413 |
Q |
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| T |
44259653 |
gagcttgcagcagaattttgggttcaatatcgtaa |
44259687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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