View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18591_low_7 (Length: 406)
Name: NF18591_low_7
Description: NF18591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18591_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 39142767 - 39143110
Alignment:
| Q |
1 |
ttttcttggatttggagggtaaatatttctctggtcctacggttttaatttcttttcacaataagaaataacttctcttcaattgattttaggtgtttgg |
100 |
Q |
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| T |
39142767 |
ttttcttggatttggagggtaaatatttcactggtcctacggttttaatttcttttcacaataagaaataacttctcttcaattgattttaggtgtttga |
39142866 |
T |
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| Q |
101 |
tttttcttcgtataaaccagtatcctccgtgtgcaactgcaaatactaatccatcgaacattgtggcacctaacatggacgacaacttactaccaagagt |
200 |
Q |
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| T |
39142867 |
tttttcttcgtgtaaaccggtatcctccatgcgcaactgcgaatactaatccatcgaacattgtggcacctaacatgggcggcaacttactaccaagagt |
39142966 |
T |
|
| Q |
201 |
tttaatattgctgtatatccaatgctgaattcgaactaggacatttattaaggtagaagagacctataccatttaatctaagcaatattgtc--ttttaa |
298 |
Q |
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| T |
39142967 |
tttaacgttgttgcatacccaatgctgaattcgaaccaggacattgattaaggtagaagagacttgtaccatttaatctaagcaatattgtcttttttaa |
39143066 |
T |
|
| Q |
299 |
gtgtttgataatttgattgagtgcgtgtttgttatgtgaaattg |
342 |
Q |
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| T |
39143067 |
gtgtttgataatttgattgagtgcgtgtttgttatgtgaaattg |
39143110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 40294690 - 40294621
Alignment:
| Q |
195 |
aagagttttaatattgctgtatatccaatgctgaattcgaact-aggacatttattaaggtagaagagac |
263 |
Q |
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| T |
40294690 |
aagagttttaacattgttgcatatccaaggctggattcgaactcaggaccttgattaaggtagaggagac |
40294621 |
T |
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