View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18591_low_8 (Length: 400)
Name: NF18591_low_8
Description: NF18591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18591_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 5 - 383
Target Start/End: Original strand, 4606338 - 4606716
Alignment:
| Q |
5 |
tgtcgaagaatatgaaaaagaacaacgtactacgcagttgacttctctacttgaacttaattgtcattcagttcaagactcatatgtttgaaataataat |
104 |
Q |
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| T |
4606338 |
tgtcgcagaaaatgaaaaagaacaacgtactacgcagttgacttctctacttgaacttaattgtcattcagttcaaggctcatatgtttgaaatgataat |
4606437 |
T |
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| Q |
105 |
gagaaattaaaattttagctcctttgtgttgtagtgtgagttcnnnnnnnactcagcgtctgctttttatttgggttccctagttcccaaggattcactt |
204 |
Q |
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| T |
4606438 |
gagaaattaaaatcttagctcctt-gtgttgtagtgtgagttctttttttactcagcgtctgctttttatttgggttccctagttcccaaggattcactt |
4606536 |
T |
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| Q |
205 |
gagtgttgagaactttacgacttgtttggacttggaaaaaagtaagttcatttttcaagttactatgtttcaactcc-nnnnnnnaaaataaaattcttt |
303 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4606537 |
gagagttgagaactttacgacttgtttggacttggaaaaaagtaagttcatttttcaagttactatgtttcaactccttttttttaaaataaaattcttt |
4606636 |
T |
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| Q |
304 |
ctacaaataaatcaaagacacaatagtaagagcttcaagttaattgacgttaacctaacactttttggaaggcatctcat |
383 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4606637 |
ctacaaataaatcaaagacacaatagtacgagcttcaagttaattgacgttaacctaacactttttggaagggatctcat |
4606716 |
T |
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