View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18591_low_9 (Length: 340)
Name: NF18591_low_9
Description: NF18591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18591_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 14414718 - 14414588
Alignment:
| Q |
51 |
tagttgttagcaattgtggtattgggtgataaaatattgtttctacggtttaatgcaatgtacataaattcgtaagaaaaatgaactattgattaaaatt |
150 |
Q |
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| T |
14414718 |
tagttgttaacaaatgtgatattgggtgatgaaatattgtttctactatataatgcgatgtacataaatttgtaagaaaaatgaactattgatgaaaatt |
14414619 |
T |
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| Q |
151 |
ggttcagatcgtgttaacattttaaatgata |
181 |
Q |
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| T |
14414618 |
ggttcaaatgatgtaaacattttaaaagata |
14414588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 325
Target Start/End: Complemental strand, 14414552 - 14414490
Alignment:
| Q |
263 |
aaacttttatgttaaatacaggtgaaattccattctccctcttcaacatctcttctttgagag |
325 |
Q |
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| T |
14414552 |
aaacttgtatgttacatataggtgaaattccaatctccctcttcaacatctcttcgttgagag |
14414490 |
T |
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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 231 - 326
Target Start/End: Original strand, 5099649 - 5099743
Alignment:
| Q |
231 |
tatcatcaaagtctttcgtaaatcataatttaaaacttttatgttaaatacaggtgaaattccattctccctcttcaacatctcttctttgagaga |
326 |
Q |
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| T |
5099649 |
tatcatcgaagtatttcgtgaatcacactttaaat-ttttatgttaaatacaggtgaaattccattatccctcttcaacatctcttctttgagaga |
5099743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 250 - 325
Target Start/End: Original strand, 5117351 - 5117428
Alignment:
| Q |
250 |
aaatcataatttaaaactttt-atgtt-aaatacaggtgaaattccattctccctcttcaacatctcttctttgagag |
325 |
Q |
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| T |
5117351 |
aaatcataattttaaactttttatgtttaaacacaggtgaaattccattgtccctcttcaacatctcttctttgagag |
5117428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 5082566 - 5082507
Alignment:
| Q |
267 |
ttttatgttaaatacaggtgaaattccattctccctcttcaacatctcttctttgagaga |
326 |
Q |
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| T |
5082566 |
ttttatgttacatacaggtgaaattcctgtatccctcttcagcatctcttctttgagaga |
5082507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 5099467 - 5099575
Alignment:
| Q |
67 |
tggtattgggtgataaaatattgtttctacggtttaatgcaa--tgtacataaattcgtaagaaaaatgaactattgattaaaattggttcagatcgtgt |
164 |
Q |
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| T |
5099467 |
tggtattgagtgataaaatattgtttctagtgtattatgcgatgtgtacataaaattttaagaaaaatggactattgttgaaaattggttcatacggtgt |
5099566 |
T |
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| Q |
165 |
taacatttt |
173 |
Q |
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| T |
5099567 |
aaacatttt |
5099575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 16877703 - 16877751
Alignment:
| Q |
281 |
caggtgaaattccattctccctcttcaacatctcttctttgagagatat |
329 |
Q |
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| T |
16877703 |
caggtgaaattccattctccctcttcaatatcacttctttgagagatat |
16877751 |
T |
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