View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18592_high_14 (Length: 257)

Name: NF18592_high_14
Description: NF18592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18592_high_14
NF18592_high_14
[»] chr6 (2 HSPs)
chr6 (11-235)||(4183455-4183679)
chr6 (11-234)||(4744296-4744520)
[»] chr1 (5 HSPs)
chr1 (12-98)||(51858125-51858211)
chr1 (12-94)||(51381898-51381980)
chr1 (130-212)||(51763495-51763574)
chr1 (11-102)||(51829257-51829348)
chr1 (16-52)||(51763375-51763411)
[»] chr3 (4 HSPs)
chr3 (11-54)||(771956-771999)
chr3 (11-54)||(2455424-2455467)
chr3 (15-54)||(13497790-13497829)
chr3 (11-59)||(2491676-2491724)
[»] scaffold0044 (1 HSPs)
scaffold0044 (11-54)||(88709-88752)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 4183455 - 4183679
Alignment:
Q  11 caaaggaggcaatatcttgaattttcgaatggaagggttacacagaaaagctaaagactcatcgatcctgacacagagcatgccatcacaagaggtaact 110  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||    
T  4183455 caaaggaggcaatatcttgaatttacgaatggaagggttacacagaaaagctaaagactcatcgatcctaacacagaccatgccatcacaagtggtaact 4183554  T
Q  111 ctccaaacatagcctcccttaagattaagaatgagaggatggttattgagctgtgtgaaactggtaaaggatgtggcggaactaaaaatagaggagattg 210  Q
    |||| || |||| ||||||||||||||||||| ||| ||||||||||||||    ||||||||||||||||||  |||||||| ||||||||||||||||    
T  4183555 ctcccaatatagtctcccttaagattaagaatcagacgatggttattgagccacttgaaactggtaaaggatgcagcggaactgaaaatagaggagattg 4183654  T
Q  211 agcatccagataagtggaacaaggg 235  Q
    ||||||||||||||| |||||||||    
T  4183655 agcatccagataagtagaacaaggg 4183679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 4744296 - 4744520
Alignment:
Q  11 caaaggaggcaatatcttgaattttcgaatggaagggttacacagaaaagctaaagactcatcgatcctgacacagagcatgccatcacaagaggtaact 110  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||    
T  4744296 caaaggaggcaatatcttgaatttacgaatggaagggttacacagaaaagctaaagactcatcgatcctaacacagaccatgccatcacaagtggtaact 4744395  T
Q  111 ctccaaacatagcctcccttaagattaagaatgagaggatggttattgagctgtgtgaaactggtaaaggatgtggcggaactaaaaatagaggagattg 210  Q
    |||| || |||| ||||||||||||||||||| ||| ||||||||||||||    ||||||||||||||||||  || ||||| ||||||||||||||||    
T  4744396 ctcccaatatagtctcccttaagattaagaatcagacgatggttattgagccacttgaaactggtaaaggatgcagcagaactgaaaatagaggagattg 4744495  T
Q  211 agcat-ccagataagtggaacaagg 234  Q
     |||| |||||||||| ||||||||    
T  4744496 ggcatcccagataagtagaacaagg 4744520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 51858211 - 51858125
Alignment:
Q  12 aaaggaggcaatatcttgaattttcgaatggaagggttacacagaaaagctaaagactcatcgatcctgacacagagcatgccatca 98  Q
    ||||||||||||||||||||||||| ||||||||||||||||| || |||  ||||   ||| ||||| ||||||||||||||||||    
T  51858211 aaaggaggcaatatcttgaattttctaatggaagggttacacaaaagagcagaagatgaatcaatcctaacacagagcatgccatca 51858125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 51381898 - 51381980
Alignment:
Q  12 aaaggaggcaatatcttgaattttcgaatggaagggttacacagaaaagctaaagactcatcgatcctgacacagagcatgcc 94  Q
    ||||||||||||||||| ||||||| |||||||||||| || | || ||||||||| ||||| || |  | ||||||||||||    
T  51381898 aaaggaggcaatatcttaaattttctaatggaagggttgcataaaagagctaaagattcatctattccaaaacagagcatgcc 51381980  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 51763495 - 51763574
Alignment:
Q  130 taagattaagaatgagaggatggttattgagctgtgtgaaactggtaaaggatgtggcggaactaaaaatagaggagattgag 212  Q
    ||||||||||||||||||| ||   | |||||||  | ||||| | |||||||| ||||||||| ||||||||||||||||||    
T  51763495 taagattaagaatgagagggtg---aatgagctgcttaaaactaggaaaggatgcggcggaactgaaaatagaggagattgag 51763574  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 51829348 - 51829257
Alignment:
Q  11 caaaggaggcaatatcttgaattttcgaatggaagggttacacagaaaagctaaagactcatcgatcctgacacagagcatgccatcacaag 102  Q
    |||||||||||||||||| |||||||  ||||||||||| ||||  | ||||||||| | ||  | ||| | ||| ||||||||||||||||    
T  51829348 caaaggaggcaatatcttaaattttctgatggaagggttgcacaagagagctaaagagtaattaaccctaaaacatagcatgccatcacaag 51829257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 51763375 - 51763411
Alignment:
Q  16 gaggcaatatcttgaattttcgaatggaagggttaca 52  Q
    ||||||||||||||||||| | |||||||||||||||    
T  51763375 gaggcaatatcttgaatttcctaatggaagggttaca 51763411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 771956 - 771999
Alignment:
Q  11 caaaggaggcaatatcttgaattttcgaatggaagggttacaca 54  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||    
T  771956 caaaggaggcaatatcttgaatttttgaatggaagggttccaca 771999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 2455467 - 2455424
Alignment:
Q  11 caaaggaggcaatatcttgaattttcgaatggaagggttacaca 54  Q
    ||||||||||||||||||||||| || |||||||||||| ||||    
T  2455467 caaaggaggcaatatcttgaattctccaatggaagggttccaca 2455424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 13497829 - 13497790
Alignment:
Q  15 ggaggcaatatcttgaattttcgaatggaagggttacaca 54  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  13497829 ggaggcaatatcttgaattttctaatggaagggttccaca 13497790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 2491724 - 2491676
Alignment:
Q  11 caaaggaggcaatatcttgaattttcgaatggaagggttacacagaaaa 59  Q
    |||||||||||||| ||| || |||| |||||||||||| |||||||||    
T  2491724 caaaggaggcaataacttaaactttctaatggaagggttccacagaaaa 2491676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 88752 - 88709
Alignment:
Q  11 caaaggaggcaatatcttgaattttcgaatggaagggttacaca 54  Q
    |||||||||||||| |||||||||||| ||||||||||| ||||    
T  88752 caaaggaggcaataccttgaattttcggatggaagggttccaca 88709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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