View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18592_high_16 (Length: 247)
Name: NF18592_high_16
Description: NF18592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18592_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 43807458 - 43807696
Alignment:
| Q |
16 |
acaacatcacaaattgcttttgtttaggtatgcttaataaaaaacctgctgttttatttatgctggtgtaatgtgatctgaagcatttcctatggtgcat |
115 |
Q |
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| T |
43807458 |
acaacatcacaaattgcttttgtttaggtatgcttaataaaaaacctgctgttttatttatgttggtgtaatgtgatctgaagcatttcctatagtgcat |
43807557 |
T |
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| Q |
116 |
gttttaattttgagtcgaaacaaattttacatcacagccgtatcaagacttg-----------------gactcaaaattttcctgcatggccttctcca |
198 |
Q |
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| T |
43807558 |
gttttaattttgagtcgaaacaaattttacatcacagccgtatcaagacttggattgagaatttgcttcgactcaaaattttcctgcatggccttctcca |
43807657 |
T |
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| Q |
199 |
taatacaaaaatctgttgagttatttctccactaatatt |
237 |
Q |
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| T |
43807658 |
taatacaaaaatctgttgagttatttctccactaatatt |
43807696 |
T |
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