View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18592_high_4 (Length: 447)
Name: NF18592_high_4
Description: NF18592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18592_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 6169979 - 6169654
Alignment:
| Q |
19 |
agtagaaaccctcatccttttttggaacaaaagttgtcgacgaatggatgaaagtgtacacgttacgttggtcgatttgaaaacaccaacgggacaaatg |
118 |
Q |
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| T |
6169979 |
agtagaaaccctcatccttttttggaacaaaagttgtcgacgaatgcatgaaagtgtacacgttacattggtcgatttgaaaacaccaacgggacaaatg |
6169880 |
T |
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| Q |
119 |
aggctattgacattgcagaaaatcctatgtttgtaaataataatagcagcagcaacttcatcccattgttccaataaaccttccaaattttgtaatgttt |
218 |
Q |
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| T |
6169879 |
aagctattgacattgcagaaaatcctatgtttgtaaataataatagcagcagcaacttcatcccattgttccaataaaccttccaaattttgtaatgttt |
6169780 |
T |
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| Q |
219 |
tctatgtttatcctcaaaaaacaaattccnnnnnnnnnnnnaatacaaacttttgttttcttacgcatgcatctccaattttattctatagggcttgaac |
318 |
Q |
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| T |
6169779 |
tctatgtttatcctcaaaaaacaaattcc--atttttttttaatacaaacttttgtattcttacgcatgcatctccaattttattctatagggcttgaac |
6169682 |
T |
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| Q |
319 |
tctctatttataaaaacaatcaactacg |
346 |
Q |
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| T |
6169681 |
tctctatttataaaaacaatcaaatacg |
6169654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 343 - 438
Target Start/End: Complemental strand, 6168649 - 6168554
Alignment:
| Q |
343 |
tacgatcacaaacggtttaggtcggaaaaacaatttatgtgagaaatatttaatccacacatagtcataaccttgaaatgttctaggcattcattt |
438 |
Q |
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| T |
6168649 |
tacgattacaaacggtttaggtcggaaaaacaatttatgtgagaaatatttaatccatacatagtcataaccttgaaatgttctaggcattcattt |
6168554 |
T |
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