View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18592_high_5 (Length: 445)
Name: NF18592_high_5
Description: NF18592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18592_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 39442652 - 39442389
Alignment:
| Q |
16 |
atgttctaaacatctctgtaaaaatttatttcaaaaagtgaagggtacacatgagtcgacttaaaaatattaaccaaaaatcatgattaaaaatatttgg |
115 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39442652 |
atgttctaaacatctctgtaaaaatttattccaaaaagtgaagggtacacatgagtcgacttaaaaatattaaccaaaaatcatgactaaaaatatttga |
39442553 |
T |
|
| Q |
116 |
agaccaaaacttgttgaaatttattagagagactacaatcaaaatttaaaataattatatggaccaaaaacttgtttaatgcttgtttttatgtgtaaac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39442552 |
agaccaaaacttgttgaaatttattagagagactacaatcaaaatataatataattatatggaccaaaaacttgtttaatgcttgtttttatgtgtaaac |
39442453 |
T |
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| Q |
216 |
acatttaaaaacacaatagtgtaggttcaaataatttttattttaaaaacacaatatgtgtaaa |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39442452 |
acatttaaaaacacaatagtgtaggttcaaataatttttattttaaaaacacaatatgtgtaaa |
39442389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 39463975 - 39463709
Alignment:
| Q |
16 |
atgttctaaacatctctgtaaaaatttatttcaaaaagtgaagggtacacatgagtcgacttaaaaatattaaccaaaaatcatgattaaaaatatttgg |
115 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| |
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| T |
39463975 |
atgttctaaacatctctgtaaaaatttattccaaaaagtgaagggtacacatgagtcgacttaaaaacattaataaaaaatcatgactaaaaatatttgg |
39463876 |
T |
|
| Q |
116 |
agaccaaaacttgttgaaatttattagagagactacaatcaaaatttaaaataattatatggaccaaaaacttgtt---taatgcttgtttttatgtgta |
212 |
Q |
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| T |
39463875 |
agaccaaaacttgttaaaatttattagagagactacaatcaaaatttaaaataattatatggaccaaaaacttgtttaataatgcttgtttttatgtgta |
39463776 |
T |
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| Q |
213 |
aacacatttaaaaacacaatagtgtaggttcaaataatttttattttaaaaacacaatatgtgtaaa |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39463775 |
aacacatttaaaaacacaatagtgtaggttcaaataatttttattttaaaaacacaatatgtgtaaa |
39463709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 276 - 429
Target Start/End: Complemental strand, 39442348 - 39442195
Alignment:
| Q |
276 |
taaaatcattgacttgctaatgtttaccagatttatttannnnnnnggtcaagatgtttgccagatttatacattaataatttaaaacatttaatatcat |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39442348 |
taaaatcattgacttgctaatgtttaccagatttatttatttttttggtcaagatgtttgccagatttatacattaataatttaaaacatttaatatcat |
39442249 |
T |
|
| Q |
376 |
tgaccnnnnnnntatttgatctcatgttgactttacaaaaaagtgtcttcattc |
429 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39442248 |
tgaccaaaaaaatatttgatctcatgttgactttacaaaaaagtgtcttcattc |
39442195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 276 - 429
Target Start/End: Complemental strand, 39463668 - 39463515
Alignment:
| Q |
276 |
taaaatcattgacttgctaatgtttaccagatttatttannnnnnnggtcaagatgtttgccagatttatacattaataatttaaaacatttaatatcat |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39463668 |
taaaatcattgacttgctaatgtttaccagatttatttatttttttggtcaagatgtttgccagatttatacattaataatttaaaacatttaatatcat |
39463569 |
T |
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| Q |
376 |
tgaccnnnnnnntatttgatctcatgttgactttacaaaaaagtgtcttcattc |
429 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39463568 |
tgaccaaaaaaatatttgatctcatgttgactttacaaaaaagtgtcttcattc |
39463515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 28010502 - 28010437
Alignment:
| Q |
19 |
ttctaaacatctctgtaaaaatttatttcaaaaagtgaagggtacacatgagtcgacttaaaaata |
84 |
Q |
| |
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|||||||||||| |||||||||| |||| | ||| || ||||||||||||||| |||||||||||| |
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|
| T |
28010502 |
ttctaaacatctttgtaaaaattcattttagaaaatggagggtacacatgagttgacttaaaaata |
28010437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 36321707 - 36321773
Alignment:
| Q |
118 |
accaaaacttgttgaaatttattagagagactacaatcaaaatttaaaataattatatggaccaaaa |
184 |
Q |
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|||||||||||||||||||| | |||| ||| | || |||||||||||||| ||||| |||||||| |
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| T |
36321707 |
accaaaacttgttgaaatttttcagagtgaccaaaaacaaaatttaaaatatttatagagaccaaaa |
36321773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 47324256 - 47324314
Alignment:
| Q |
73 |
gacttaaaaatattaaccaaaaatcatgattaaaaatattt-ggagaccaaaacttgtt |
130 |
Q |
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||||||||||||| || ||||| || |||| |||||||||| ||||||||||||||||| |
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| T |
47324256 |
gacttaaaaatataaatcaaaagtcgtgatgaaaaatatttaggagaccaaaacttgtt |
47324314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 13416199 - 13416263
Alignment:
| Q |
120 |
caaaacttgttgaaatttattagagagactacaatcaaaatttaaaataattatatggaccaaaa |
184 |
Q |
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||||| ||| |||||||| ||||||| || | ||||||||||||||||| |||||| ||| |||| |
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| T |
13416199 |
caaaatttgatgaaattttttagagaaacgaaaatcaaaatttaaaatatttatatcgacaaaaa |
13416263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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