View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18592_high_8 (Length: 365)
Name: NF18592_high_8
Description: NF18592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18592_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 5067448 - 5067111
Alignment:
| Q |
15 |
caaaggtcaaggtaaaaatcataaacaacttcacatgnnnnnnnnnnnnnnnnnccatcatcatcatttgattggttactttggtgcatgtgttctataa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5067448 |
caaaggtcaaggtaaaaatcataaacaacttcacatgttttttgttttgtttttccatcatcatcatttgattggttactttggtgcatgtgttctataa |
5067349 |
T |
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| Q |
115 |
agtctaatgttcctatgttcatgtttcttgttagtggagtggtttttatgtacttggttttttagactattccattggtttcattttcttcatattttct |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5067348 |
-gtctaatgttcctatgttcatgtttcttgttagtggagtggtttttatgtacttggttttttagactattccattggtttcattttcttcatattttct |
5067250 |
T |
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| Q |
215 |
tgat------nnnnnnnnnnnctactttgatcatcttcccttgcatggcactgtgatttatcacattaattaatcacccttttgaatgtattacaaaaat |
308 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5067249 |
tgataaaaaaaaaaaaaaaaactactttgatcatcttcccttgcatggcactgtgatttatcacattaattaatcacccttttgaatgtattacaaaaat |
5067150 |
T |
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| Q |
309 |
catggggtgtttaaccaaatcacgatgatactatgattt |
347 |
Q |
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|||||||||||||||||||||||||||| ||| |||||| |
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| T |
5067149 |
catggggtgtttaaccaaatcacgatgacactgtgattt |
5067111 |
T |
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