View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18592_high_9 (Length: 329)
Name: NF18592_high_9
Description: NF18592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18592_high_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 34386730 - 34386417
Alignment:
| Q |
16 |
atagttaaatataaaattaataatcaaattatattgcattaacaatattagtcccagtgaaactagattatgatacaagcatgtttgattttctgtttgc |
115 |
Q |
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| T |
34386730 |
atagttaaatataaaattaataatcaaattatattgcattaacaatattagtcccagtgaaactagattatgatacaagcatgtttgattttctgtttgt |
34386631 |
T |
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| Q |
116 |
ctaaacgttttttgtcaaccaaaattggacttggttataaatttggggaattatttttgtttgttccaaaaagtagtttttgcttcaaaagcaagtttaa |
215 |
Q |
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| T |
34386630 |
ctaaacgtattttgtcaaccaaaattgggcttggttataaatttggggaattatttttgtttgttccaaaaagtagtttttgcttcaaaagcaagtttaa |
34386531 |
T |
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| Q |
216 |
ttggaaatatcaaaccctcgtgtttttcaattctcatttttctgtttgagaagcattcaacttctcattttgcgaaaggaatagaggcagaacaaaggca |
315 |
Q |
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| T |
34386530 |
ttggaaatatcaaaccctcgtgtttttcaattctcatttttctgtttgagaagcattcaacttctcattttgcgaaaggaatagaggcagaacaaaggca |
34386431 |
T |
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| Q |
316 |
gcggcagaagtgct |
329 |
Q |
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| T |
34386430 |
gcggcagaagtgct |
34386417 |
T |
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