View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18592_low_1 (Length: 923)

Name: NF18592_low_1
Description: NF18592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18592_low_1
NF18592_low_1
[»] chr1 (5 HSPs)
chr1 (18-915)||(24420472-24421369)
chr1 (350-660)||(18399901-18400211)
chr1 (458-558)||(24042521-24042621)
chr1 (368-435)||(43464990-43465057)
chr1 (485-538)||(21389967-21390020)
[»] chr7 (3 HSPs)
chr7 (292-734)||(43462533-43462975)
chr7 (358-627)||(43453201-43453470)
chr7 (467-541)||(36384254-36384328)
[»] chr4 (2 HSPs)
chr4 (460-541)||(25214586-25214667)
chr4 (355-403)||(44509826-44509874)
[»] chr8 (1 HSPs)
chr8 (360-541)||(39940183-39940364)
[»] chr6 (1 HSPs)
chr6 (146-210)||(3113217-3113282)
[»] chr3 (1 HSPs)
chr3 (488-537)||(20501355-20501404)
[»] chr5 (1 HSPs)
chr5 (497-539)||(38810334-38810376)


Alignment Details
Target: chr1 (Bit Score: 849; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 849; E-Value: 0
Query Start/End: Original strand, 18 - 915
Target Start/End: Original strand, 24420472 - 24421369
Alignment:
Q  18 ttcttcacagttgaagttaaaagggaaattttattgatctgaaaaaccatggttgtcagtatcttacgaaattgatacaaaatttgatacaaaattgaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  24420472 ttcttcacagttgaagttaaaagggaaattttattgatctgaaaaaccatggttgtcagtatcttacgaaattgatacaaaattctatacaaaattgaac 24420571  T
Q  118 tcaatcaatatgaatatggaatccgtaatgtgcatctattatggacatgattctcattgaatcctaattcattccaatgaatcactacctaaactttaat 217  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24420572 tcaatcgatatgaatatggaatccgtaatgtgcatctattgtggacatgattctcattgaatcctaattcattccaatgaatcactacctaaactttaat 24420671  T
Q  218 atagtcaaccnnnnnnngtcaaatttgtatagaaacaaacaattgaagataaaagagaattaacatttggacaaacctggtttgaaaaaacaagataatc 317  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24420672 atagtcaacctttttttgtcaaatttgtatagaaacaaacaattgaagataaaagagaattaacatttggacaaacctggtttgaaaaaacaagataatc 24420771  T
Q  318 caaagtcgattgccttaaggggagattcttcctgctgattaacaaaaagaaaattctccggcttaagatcacgatgcattacaccaagagaatgacatga 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24420772 caaagtcgattgccttaaggggagattcttcctgctgattaacaaaaagaaaattctccggcttaagatcgcgatgcattacaccaagagaatgacatga 24420871  T
Q  418 ctgaataacaccaacaatagtccttgcaagtttcgcggcctttctttctgtataatgccctctttccacaatcctatcaaaaagttcaccacctgcacac 517  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24420872 ctgaataacaccaacaatagtccttgcaagtttcgccgcctttctttctgtataatgccctctttccacaatcctatcaaaaagttcaccacctgcacac 24420971  T
Q  518 aactccataacaacatgaacagcaacagcatcctcagaagcttccttaatcgaaatcacattcgaactgccagccaagtgatgcataatctgaatctctc 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24420972 aactccataacaacatgaacagcaacagcatcctcagaagcttccttaatcgaaatcacattcgaactgccagccaagtgatgcataatctgaatctctc 24421071  T
Q  618 tcctcacatcttccacatcctcttcagtcaacaacttcctcttcatgattgacttgcatgcatactctttcccagtagatttctccacacaaaggaatgt 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24421072 tcctcacatcttccacatcctcttcagtcaacaacttcctcttcatgattgacttgcatgcatactctttcccagtagatttctccacacaaaggaatgt 24421171  T
Q  718 agttccaaattgcccttgtcctagctttggtcctaaagtataaaactccttaagactaaccgtttttcgctgtaaaactgaatctgcttttaaccctgca 817  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24421172 agttccaaattgcccttgtcctagctttggtcctaaagtataaaactccttaagactaaccgtttttcgctgtaaaactgaatctgcttttagccctgca 24421271  T
Q  818 cttgctagtctcttcacattgtgaggtctctttggttttgcaggtgtagcaacaacagcttcattagtttgtggtttttgtcgcggtttttgatgatg 915  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24421272 cttgctagtctcttcacattgtgaggtctctttggttttgcaggtgtagcaacaacagcttcattagtttgtggtttttgtcgcggtttttgatgatg 24421369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 350 - 660
Target Start/End: Complemental strand, 18400211 - 18399901
Alignment:
Q  350 tgctgattaacaaaaagaaaattctccggcttaagatcacgatgcattacaccaagagaatgacatgactgaataacaccaacaatagtccttgcaagtt 449  Q
    |||||||||||||| ||||||||||| |||||||| || | |||||| ||||||||||||||||| |  | || ||||||||| ||||||||   |||||    
T  18400211 tgctgattaacaaagagaaaattctcgggcttaaggtctctatgcatcacaccaagagaatgacaggcttcaacaacaccaactatagtcctaataagtt 18400112  T
Q  450 tcgcggcctttctttctgtataatgccctctttccacaatcctatcaaaaagttcaccacctgcacacaactccataacaacatgaacagcaacagcatc 549  Q
      || ||||||||||| |||||||| || |  |  | ||||| ||| ||||| ||||||||||||||||| ||||| ||||||||||| || |  |||||    
T  18400111 cagccgcctttctttcagtataatgtccgcgctgaataatccgatcgaaaagctcaccacctgcacacaattccatcacaacatgaaccgccattgcatc 18400012  T
Q  550 ctcagaagcttccttaatcgaaatcacattcgaactgccagccaagtgatgcataatctgaatctctctcctcacatcttccacatcctcttcagtcaac 649  Q
     ||| ||||  | || || || || ||||| | |   || ||||| |||||||| |||||||| ||||| |||||||| || |||||||| || || | |    
T  18400011 ttcataagcacctttgatggatataacattaggatgaccggccaaatgatgcattatctgaatttctcttctcacatcctcaacatcctcatcggttacc 18399912  T
Q  650 aacttcctctt 660  Q
    || ||||||||    
T  18399911 aatttcctctt 18399901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 458 - 558
Target Start/End: Complemental strand, 24042621 - 24042521
Alignment:
Q  458 tttctttctgtataatgccctctttccacaatcctatcaaaaagttcaccacctgcacacaactccataacaacatgaacagcaacagcatcctcagaag 557  Q
    ||||||||  ||||||||||||| |  | ||||||||| ||||| |||||||| ||||| |||||||||||||||||||| ||||| ||||| ||| |||    
T  24042621 tttctttcactataatgccctctctgtataatcctatcgaaaagctcaccaccagcacataactccataacaacatgaaccgcaacggcatcttcataag 24042522  T
Q  558 c 558  Q
    |    
T  24042521 c 24042521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 435
Target Start/End: Original strand, 43464990 - 43465057
Alignment:
Q  368 aaattctccggcttaagatcacgatgcattacaccaagagaatgacatgactgaataacaccaacaat 435  Q
    ||||| || ||||||||||| |  ||||| ||||||||||||||||||| || || ||||||||||||    
T  43464990 aaattttcaggcttaagatctctgtgcatgacaccaagagaatgacatgtctcaacaacaccaacaat 43465057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 538
Target Start/End: Original strand, 21389967 - 21390020
Alignment:
Q  485 acaatcctatcaaaaagttcaccacctgcacacaactccataacaacatgaaca 538  Q
    ||||||| ||||||||| ||||||||| |||| | ||||||||||| |||||||    
T  21389967 acaatccgatcaaaaagctcaccaccttcacaaagctccataacaagatgaaca 21390020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 292 - 734
Target Start/End: Complemental strand, 43462975 - 43462533
Alignment:
Q  292 acctggtttgaaaaaacaagataatccaaagtcgattgccttaaggggagattcttcctgctgattaacaaaaagaaaattctccggcttaagatcacga 391  Q
    |||||||||||| |||| ||| |||||||| || ||||| ||||| |  || ||||| ||   || ||||||||||||||| || ||||||||||||| |    
T  43462975 acctggtttgaagaaactagacaatccaaaatcaattgctttaagagttgaatcttcatgtccatcaacaaaaagaaaattttcaggcttaagatcacaa 43462876  T
Q  392 tgcattacaccaagagaatgacatgactgaataacaccaacaatagtccttgcaagtttcgcggcctttctttctgtataatgccctctttccacaatcc 491  Q
    ||||| || ||| | || ||||| | || || ||||| ||| ||||| ||||||||||| |||||||||  ||| |  || |  ||||||| ||||||||    
T  43462875 tgcataactccacgtgagtgacaagtctcaacaacactaacgatagttcttgcaagtttagcggccttttgttcggcgtagtaacctcttttcacaatcc 43462776  T
Q  492 tatcaaaaagttcaccacctgcacacaactccataacaacatgaacagcaacagcatcctcagaagcttccttaatcgaaatcacattcgaactgccagc 591  Q
    ||||||| |  ||||| |||  ||| || ||||| |||| || |||| || ||| ||| ||| || || | || ||  | ||||||||   ||| ||| |    
T  43462775 tatcaaacaactcacctcctttacataattccatgacaatataaacaacatcagaatcttcataaactccttttatacatatcacatttagactcccaac 43462676  T
Q  592 caagtgatgcataatctgaatctctctcctcacatcttccacatcctcttcagtcaacaacttcctcttcatgattgacttgcatgcatactctttccca 691  Q
    |||||||||||| |||| ||| || ||||||||||| || ||||| || ||    ||||| |||  |||   ||||  |||||||||||||  ||||||     
T  43462675 caagtgatgcattatcttaatttccctcctcacatcctctacatcatcatcttctaacaatttcacctttgggattaccttgcatgcatacgttttcccg 43462576  T
Q  692 gtagatttctccacacaaaggaatgtagttccaaattgccctt 734  Q
    || |||||||||| ||||||  | ||||||||||||| |||||    
T  43462575 gttgatttctccaaacaaagtgaagtagttccaaattcccctt 43462533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 358 - 627
Target Start/End: Complemental strand, 43453470 - 43453201
Alignment:
Q  358 aacaaaaagaaaattctccggcttaagatcacgatgcattacaccaagagaatgacatgactgaataacaccaacaatagtccttgcaagtttcgcggcc 457  Q
    ||||||||| ||||| || |||||||||||||||||||| || ||| | || ||||| | || || ||||  |||||| || ||||| ||||| || |||    
T  43453470 aacaaaaaggaaattttcaggcttaagatcacgatgcataactccacgtgagtgacaagcctcaacaacattaacaatcgttcttgcgagtttagcagcc 43453371  T
Q  458 tttctttctgtataatgccctctttccacaatcctatcaaaaagttcaccacctgcacacaactccataacaacatgaacagcaacagcatcctcagaag 557  Q
    ||||| || || ||||| |  |||||||||||||| ||||| |  ||||| ||| |||| || ||||| |||| || |||| | || | ||| ||| |||    
T  43453370 tttctctcggtgtaatgtctcctttccacaatcctgtcaaacaactcacctccttcacataattccattacaatataaacaacgaccggatcttcataag 43453271  T
Q  558 cttccttaatcgaaatcacattcgaactgccagccaagtgatgcataatctgaatctctctcctcacatc 627  Q
    || | || || || |||||||| | | | ||| | ||||||||||| || | |||||| |||||||||||    
T  43453270 ctccttttattgatatcacatttggaatcccaactaagtgatgcattatttcaatctccctcctcacatc 43453201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 467 - 541
Target Start/End: Original strand, 36384254 - 36384328
Alignment:
Q  467 gtataatgccctctttccacaatcctatcaaaaagttcaccacctgcacacaactccataacaacatgaacagca 541  Q
    |||||||| |||||  | ||||||| ||||||||| ||||||||| |||| | ||||||||||| ||||||||||    
T  36384254 gtataatgtcctctagcaacaatccgatcaaaaagctcaccaccttcacaaagctccataacaagatgaacagca 36384328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 460 - 541
Target Start/End: Complemental strand, 25214667 - 25214586
Alignment:
Q  460 tctttctgtataatgccctctttccacaatcctatcaaaaagttcaccacctgcacacaactccataacaacatgaacagca 541  Q
    ||||||||||||||| ||| |  | ||||||||||||||||||||||||||| ||||||| |||||||||| || |||||||    
T  25214667 tctttctgtataatgacctttagcaacaatcctatcaaaaagttcaccaccttcacacaattccataacaagataaacagca 25214586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 44509874 - 44509826
Alignment:
Q  355 attaacaaaaagaaaattctccggcttaagatcacgatgcattacacca 403  Q
    |||| |||| ||||||||||||||||||||||| |||||||| ||||||    
T  44509874 attagcaaatagaaaattctccggcttaagatcccgatgcataacacca 44509826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 360 - 541
Target Start/End: Complemental strand, 39940364 - 39940183
Alignment:
Q  360 caaaaagaaaattctccggcttaagatcacgatgcattacaccaagagaatgacatgactgaataacaccaacaatagtccttgcaagtttcgcggcctt 459  Q
    |||| |||||||||||||| |||||||| | |||||| ||||||||||| ||||| || | || |||  ||||||||||| |    |     || || |     
T  39940364 caaagagaaaattctccggtttaagatccctatgcataacaccaagagagtgacaagattcaacaacttcaacaatagtcttaatcaaaccagcagcttg 39940265  T
Q  460 tctttctgtataatgccctctttccacaatcctatcaaaaagttcaccacctgcacacaactccataacaacatgaacagca 541  Q
    ||||||  ||||||| ||  ||| |||||||||||||||||||||||||||| |||| | ||||||||||| ||||||||||    
T  39940264 tctttcactataatgaccctttttcacaatcctatcaaaaagttcaccaccttcacaaagctccataacaatatgaacagca 39940183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 3113217 - 3113282
Alignment:
Q  146 tgtgcatctattatggacatgattctcat--tgaatcctaattcattccaatgaatcactacctaaa 210  Q
    |||||||||||| ||||||||| ||||||  ||||||||||||||||| ||||||||||||||||||    
T  3113217 tgtgcatctatt-tggacatgaatctcatcttgaatcctaattcattctaatgaatcactacctaaa 3113282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 537
Target Start/End: Complemental strand, 20501404 - 20501355
Alignment:
Q  488 atcctatcaaaaagttcaccacctgcacacaactccataacaacatgaac 537  Q
    ||||||||||||||||||||||| ||||| |  |||||||||||||||||    
T  20501404 atcctatcaaaaagttcaccaccagcacaaagttccataacaacatgaac 20501355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 497 - 539
Target Start/End: Original strand, 38810334 - 38810376
Alignment:
Q  497 aaaagttcaccacctgcacacaactccataacaacatgaacag 539  Q
    |||||||||||||| ||||||||||||||||| | ||||||||    
T  38810334 aaaagttcaccaccagcacacaactccataaccaaatgaacag 38810376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University