View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18592_low_15 (Length: 290)
Name: NF18592_low_15
Description: NF18592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18592_low_15 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 290
Target Start/End: Original strand, 47752841 - 47753116
Alignment:
| Q |
14 |
atcagtgactatggaggctnnnnnnngaggagctgctaagcttggtcaaaagcagcctattcataggaaatctattgacacttttggacagagaacatct |
113 |
Q |
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| T |
47752841 |
atcagtgactatggaggctaaaaaaagaggagctgctaagcttggtcaaaagcagcctattcataggaaatctattgacacttttggacagagaacatct |
47752940 |
T |
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| Q |
114 |
cagtatagaggtgtcacaaggtaaatttgtgttgatcataannnnnnnnatctcatagtgtgttcttcattgtttgattacatttaattatacttgtcta |
213 |
Q |
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| T |
47752941 |
cagtatagaggtgtcacaaggtaaatttgtgttgatcataattttttt-atctcatagtgtgttcttcattgtttgattacatttaattatacttgtcta |
47753039 |
T |
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| Q |
214 |
gtataatatgtttggatgtttatttattctgcattaggcatagatggactggtagatatgaagcacatttatgggat |
290 |
Q |
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| T |
47753040 |
gtataatatgtttggatgtttatttattctgcattaggcatagatggactggtagatatgaagcacatttatgggat |
47753116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 7210437 - 7210480
Alignment:
| Q |
247 |
ttaggcatagatggactggtagatatgaagcacatttatgggat |
290 |
Q |
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| T |
7210437 |
ttaggcatagatggactgggagatatgaagcacatttatgggat |
7210480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 40189316 - 40189379
Alignment:
| Q |
73 |
ttcataggaaatctattgacacttttggacagagaacatctcagtatagaggtgtcacaaggta |
136 |
Q |
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| T |
40189316 |
ttcataggaaatctattgatacttttggtcaaagaacctctcaatatagaggtgtaacaaggta |
40189379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 40189466 - 40189509
Alignment:
| Q |
246 |
attaggcatagatggactggtagatatgaagcacatttatggga |
289 |
Q |
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| T |
40189466 |
attaggcataggtggactgggagatatgaagctcatttatggga |
40189509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 4847063 - 4847022
Alignment:
| Q |
249 |
aggcatagatggactggtagatatgaagcacatttatgggat |
290 |
Q |
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| T |
4847063 |
aggcatagatggaccggtagatatgaagcacatttatgggat |
4847022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 4847582 - 4847494
Alignment:
| Q |
47 |
tgctaagcttggtcaaaagcagcctattcataggaaatctattgacacttttggacagagaacatctcagtatagaggtgtcacaaggt |
135 |
Q |
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| T |
4847582 |
tgctaaggttggacagaagcaacctgctcataggaaaactattagcacatttggtcaaagaacttctcagtatagaggagtgacaaggt |
4847494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 36112472 - 36112428
Alignment:
| Q |
246 |
attaggcatagatggactggtagatatgaagcacatttatgggat |
290 |
Q |
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| T |
36112472 |
attaggcatagatggactggtcgttatgaagcacatctatgggat |
36112428 |
T |
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