View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18592_low_22 (Length: 238)

Name: NF18592_low_22
Description: NF18592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18592_low_22
NF18592_low_22
[»] chr3 (2 HSPs)
chr3 (78-186)||(10368687-10368795)
chr3 (176-222)||(10368827-10368873)
[»] chr8 (2 HSPs)
chr8 (103-176)||(11659585-11659658)
chr8 (103-176)||(11668754-11668827)
[»] chr4 (1 HSPs)
chr4 (86-141)||(53239235-53239290)
[»] chr1 (1 HSPs)
chr1 (86-141)||(2170350-2170405)


Alignment Details
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 10368687 - 10368795
Alignment:
Q  78 caacccgtgctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcacccctta 177  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10368687 caacccgtactgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcacccctta 10368786  T
Q  178 tatatatat 186  Q
    |||||||||    
T  10368787 tatatatat 10368795  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 10368827 - 10368873
Alignment:
Q  176 tatatatatatgcgtgtgtgtgtcttaaggaacaattgtggagtata 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  10368827 tatatatatatgcgtgtgtgtgtcttaaggaacaattgtggagtata 10368873  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 11659585 - 11659658
Alignment:
Q  103 attgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcacccctt 176  Q
    |||||||||||| ||||||| |||||||| | ||||||||| ||||||||||||||||||||||||||| ||||    
T  11659585 attgaaaaggacagcaagaacaagaaggaggctactatttcaaggtatgggtttgcatttcgatctcactcctt 11659658  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 11668754 - 11668827
Alignment:
Q  103 attgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcacccctt 176  Q
    |||||||||||| |||| ||||||||||| | ||||||||| |||||| |||||||||||||||||||| ||||    
T  11668754 attgaaaaggacagcaaaaagaagaaggaggctactatttcaaggtatcggtttgcatttcgatctcactcctt 11668827  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 53239235 - 53239290
Alignment:
Q  86 gctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatt 141  Q
    |||| |||||| ||||||||||||||||| ||||||||||||| |||| |||||||    
T  53239235 gctgcagtggtctgaaaattgaaaaggacagcaagaagaagaaagaagctactatt 53239290  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 2170350 - 2170405
Alignment:
Q  86 gctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatt 141  Q
    |||| |||||| ||||||||||||||||| ||||||||||||| |||| |||||||    
T  2170350 gctgcagtggtctgaaaattgaaaaggacagcaagaagaagaaagaagctactatt 2170405  T

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