View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18592_low_23 (Length: 226)
Name: NF18592_low_23
Description: NF18592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18592_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 27638426 - 27638622
Alignment:
| Q |
15 |
gttgttgttgataatattgtggaggttgaagttgttgtaactctacgagtccacctaagtaaaggtcattgacatagaaaggaaatacattatttccgtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27638426 |
gttgttgttgataatattgtggaggttgaagttgttgtaactctacgagtccacctaagtaaaggtcattgacatagaaaggaaatacattatttccgtg |
27638525 |
T |
|
| Q |
115 |
agagggtggttgcatggccattatttcagaaccaactttgatgaaacaaattcataaacaagatttgattaaatctaaatgttttaaggatggttct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27638526 |
agagggtggttgcatggccattatttcagaaccaaccttgatgaaacaaattcataaacaagatttgattaaatctaaatgttttaaggatggttct |
27638622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 37354610 - 37354806
Alignment:
| Q |
15 |
gttgttgttgataatattgtggaggttgaagttgttgtaactctacgagtccacctaagtaaaggtcattgacatagaaaggaaatacatta-tttccgt |
113 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
37354610 |
gttgttgttgatgatatcgtggaggttgaagttgttgtaactctgcgagtccacctaagtaaaggtcattgacataaaaaggaaatacattattttccgt |
37354709 |
T |
|
| Q |
114 |
gagagggtggttgcatggccattatttcagaaccaactttgatgaaacaaattcataaacaagatttgattaaatctaaatgttttaaggatggttct |
211 |
Q |
| |
|
||| ||||| ||||||||||| ||||||||| ||||| |||| ||||||||| |||||| ||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
37354710 |
gagtgggtgattgcatggccactatttcagagccaaccttgaagaaacaaatgcataaattagatttgataaaatc-aaatgttttaagggtggttct |
37354806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 37366584 - 37366780
Alignment:
| Q |
15 |
gttgttgttgataatattgtggaggttgaagttgttgtaactctacgagtccacctaagtaaaggtcattgacatagaaaggaaatacatta-tttccgt |
113 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
37366584 |
gttgttgttgatgatatcgtggaggttgaagttgttgtaactctgcgagtccacctaagtaaaggtcattgacataaaaaggaaatacattattttccgt |
37366683 |
T |
|
| Q |
114 |
gagagggtggttgcatggccattatttcagaaccaactttgatgaaacaaattcataaacaagatttgattaaatctaaatgttttaaggatggttct |
211 |
Q |
| |
|
||| ||||| ||||||||||| ||||||||| ||||| |||| ||||||||| |||||| ||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
37366684 |
gagtgggtgattgcatggccactatttcagagccaaccttgaagaaacaaatgcataaattagatttgataaaatc-aaatgttttaagggtggttct |
37366780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 27912431 - 27912484
Alignment:
| Q |
15 |
gttgttgttgataatattgtggaggttgaagttgttgtaactctacgagtccac |
68 |
Q |
| |
|
||||| ||| || |||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
27912431 |
gttgtggttcattatattgtggatgttgagattgttgtaactctacgagtccac |
27912484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University