View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18592_low_7 (Length: 399)
Name: NF18592_low_7
Description: NF18592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18592_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 16823777 - 16824105
Alignment:
| Q |
1 |
ttataggttgatcagcaacaaattgaaaatcatattcattactgacattttgcatttttatgcctacactctttgattcacgtttcttcgattctccatt |
100 |
Q |
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| T |
16823777 |
ttataggttgatcagcaacaaattgaaaatcatatttattactgacattttgcatttttatgcctacactctttgattcacgtttcttcgattctccatt |
16823876 |
T |
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| Q |
101 |
ccctttggaagaagaacaacccttcactagatcaaaataatcctttttctcaaaggtcattaaattggaatgatctgcatgttctgatgcatcattgcaa |
200 |
Q |
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| T |
16823877 |
ccctttggaagaagaacaacccttcactggatcaaaataatcctttttctcaaaggttattaaattggaatgatctgcatgttctgatacatcattgcaa |
16823976 |
T |
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| Q |
201 |
acagaagaaggactattttcaatgtttacctccacattattcgtctcagaaattacacatttttgatccttcacctctctcaccatctccagtaacccat |
300 |
Q |
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| T |
16823977 |
acagaagaaggactattttcaatgtttacctccacattattcgtctcagaaattacacatttttgatcctccacctctctcaccatctccagtaacccat |
16824076 |
T |
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| Q |
301 |
tggaaaattcttcccaaatcttactcaaa |
329 |
Q |
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| T |
16824077 |
tggaaaattcttcccaaatcttactcaaa |
16824105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 76 - 264
Target Start/End: Complemental strand, 16836128 - 16835942
Alignment:
| Q |
76 |
attcacgtttcttcgattctccattccctttggaagaagaacaacccttcactagatcaaaataatcctttttctcaaaggtcattaaattggaatgatc |
175 |
Q |
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| T |
16836128 |
attcaagtttctttgatactccattccggttggaagaagaacagctcttcattggatcaaaataatcccttttctcaaaggttattaaactataatgatc |
16836029 |
T |
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| Q |
176 |
tgcatgtt-ctgatgcatcattgcaaacagaagaaggactattttcaatgtttacctccacattattcgtctcagaaattacacattttt |
264 |
Q |
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| T |
16836028 |
tgaatgttcccgattcatcattgcaaacagaaga---actatattcaatgttaacctccttattattcctctcagaaattccactttttt |
16835942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 16835507 - 16835599
Alignment:
| Q |
172 |
gatctgcatgttctgatgcatcattgcaaacagaagaaggactattttcaatgtttacctccacattattcgtctcagaaattacacattttt |
264 |
Q |
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| T |
16835507 |
gatctgcatgttctgatacatcattgcaaacagatgaaagattattttcaatgtttatctcctcattattccactcagaaattccactttttt |
16835599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 35263085 - 35263000
Alignment:
| Q |
205 |
aagaaggactattttcaatgtttacctccacattattcgtctcagaaattacacatttttgatccttcacctctctcaccatctcc |
290 |
Q |
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|||| |||||||| |||| ||||| | | |||||||| ||||||||||| ||| |||| ||||||| ||||||||||||||||| |
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| T |
35263085 |
aagatggactattctcaacatttactttctcattattcctctcagaaattccactctttttatccttcccctctctcaccatctcc |
35263000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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