View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18592_low_8 (Length: 388)
Name: NF18592_low_8
Description: NF18592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18592_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 47752835 - 47752456
Alignment:
| Q |
1 |
tccagtaggtgagatctgtctaggaacagtaacacagctagattgagaaccagggctcattgaaaggcttaaagattgtaactcaccactttctacagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47752835 |
tccagtaggtgagatctgtctaggaacagtaacacagctagattgagaaccagggctcattgaaaggcttaaagattgtaactcaccactttctacagaa |
47752736 |
T |
|
| Q |
101 |
ccaacaacagtagaagaaccaccaacaccaactccaccattgtgattccccatttgctgctctaaagcctgagaagcaggataccagttttgaggcattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47752735 |
ccaacaacagtagaagaaccaccaacaccaactccaccattgtgattccccatttgctgctctaaagcctgagaagcaggataccagttttgaggcattt |
47752636 |
T |
|
| Q |
201 |
gggaagtagaaacatcaacatggtttatgttttcctttgattctacctctaatggtgcttgaaataggccatggaaaccaagtgctgcataatatggatg |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47752635 |
gggaagtagaaacatcaacatggttaatgttttcctttgattctacctctaatggtgcttgaaataggccatggaaaccaagtgctgcataatatggatg |
47752536 |
T |
|
| Q |
301 |
tgatgtttgttgtctgaaagattctgaaagaaggtcaagggaatggtctctattagcttgatgaggatctgcattttgtt |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47752535 |
tgatgtttgttgtctgaaagattctgaaagaaggtcaagggaatggtctctattagcttgatgaggatctgcattttgtt |
47752456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 4847643 - 4847709
Alignment:
| Q |
23 |
ggaacagtaacacagctagattgagaaccagggctcattgaaaggcttaaagattgtaactcaccac |
89 |
Q |
| |
|
|||||||||||||| || |||||||||||||| ||||| |||||||||| || |||||||| |||| |
|
|
| T |
4847643 |
ggaacagtaacacaacttgattgagaaccaggactcatagaaaggcttagagtctgtaactctccac |
4847709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University