View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18592_low_9 (Length: 386)
Name: NF18592_low_9
Description: NF18592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18592_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 34691534 - 34691174
Alignment:
| Q |
17 |
gaaaagagtgtttaccaccgaatggttccagtagaggcaatctgagttcatcaaatagttgacggtgatatcttcaaaaaatgggggtggaggagttgat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34691534 |
gaaaagagtgtttaccaccgaatggttccagtagaggcaatatgagttcatcaaatagttgccggtgatatcttcaaaaaatgggggtggaggagttgat |
34691435 |
T |
|
| Q |
117 |
ggtttatgagaagggatgctacggatccaaggtatgataatatgaaattactacatgattcttgcatagataatgtgaaggtcatacaattacgttgata |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34691434 |
ggtttgtgagaagggatgctacggatccaaggtatgataatatgaaattactacatgattcttgcatagataatgtgaaggtcatacaattacgttgata |
34691335 |
T |
|
| Q |
217 |
tgaaattagtacatgattcttgcaactctttataatattgatcctataaatagaggttttatgacacttgagatatatagacaataattgaatgatgtag |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34691334 |
tgaaattagtacatgattcttgcaactctttataatattgatcctataaatagaggtttcatgacacttgagatatatagacaataattgaatgatgtag |
34691235 |
T |
|
| Q |
317 |
tgatatctagttggttattctcttgagttttctctagatctttcatctcttggttcttctc |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34691234 |
tgatatctagttggttattctcttgagttttctctagatctttcatctcttggttcttctc |
34691174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 52965959 - 52966053
Alignment:
| Q |
54 |
caatctgagttcatcaaatagttgacggtgatatcttcaaaaaatgggggtggaggagttgatggtttatgagaagggatgctacggatccaagg |
148 |
Q |
| |
|
|||||||| |||||||| | ||||| |||| |||||||||||||||||||| | |||||| |||||||| ||||| |||||||| |||||||| |
|
|
| T |
52965959 |
caatctgaattcatcaattgattgactgtgaggtcttcaaaaaatgggggtggtgtagttgaaggtttatgtgaaggaatgctacgtatccaagg |
52966053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 51492872 - 51492966
Alignment:
| Q |
54 |
caatctgagttcatcaaatagttgacggtgatatcttcaaaaaatgggggtggaggagttgatggtttatgagaagggatgctacggatccaagg |
148 |
Q |
| |
|
|||||||| |||||||| || ||||| |||| |||||||||||||||||||| |||||||| |||||||| ||||| ||| || | |||||||| |
|
|
| T |
51492872 |
caatctgaattcatcaattaattgactgtgaggtcttcaaaaaatgggggtggcggagttgaaggtttatgtgaaggaatgttatgtatccaagg |
51492966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 42577853 - 42577962
Alignment:
| Q |
39 |
tggttccagtagaggcaatctgagttcatcaaatagttgacggtgatatcttcaaaaaatgggggtggaggagttgatggtttatgagaagggatgctac |
138 |
Q |
| |
|
|||||||| |||| |||||||| |||||||| | ||||| |||| |||||||||||| ||||||| |||||||| ||||| || ||||| ||||||| |
|
|
| T |
42577853 |
tggttccatgagagacaatctgaattcatcaattgattgactgtgaggtcttcaaaaaataggggtggcggagttgaaggtttgtgtgaaggaatgctac |
42577952 |
T |
|
| Q |
139 |
ggatccaagg |
148 |
Q |
| |
|
| |||||||| |
|
|
| T |
42577953 |
gtatccaagg |
42577962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University