View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_high_1 (Length: 890)
Name: NF18593_high_1
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 18 - 744
Target Start/End: Original strand, 2483847 - 2484558
Alignment:
| Q |
18 |
attacaaattgattattgagtttcttcatgtgcagcaagtggcatatcttgtgtttgcaattttggtttcttcttaaaataggcaccgcttgcaacattt |
117 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483847 |
attacaacttgattattgagtttcttcatgtgcagcaagtggcatatcttgaatt-gcaattttggtttcttcttaaaataggcaccgcttgcaacattt |
2483945 |
T |
|
| Q |
118 |
ggattgagaaagttgtcgttttaaataaaaagagtttgattgagtatacaatttggaatttgctaccacaattgcatttgaagttattggattaattgag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483946 |
ggattgagaaagttgtcgttttaaataaaaagagtttgattgagtatacaatttggaatttgctaccacaattgcatttgaagttattggattaattgag |
2484045 |
T |
|
| Q |
218 |
aggcggtttggtaataagaaaaaatattgcgatccactcagaatggtttgtttggtgtggttgtgatgcaatttggtgataaattgtatatttagttcga |
317 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484046 |
aggcggtttggtaataagaaaaaatattacgatccactcagaaaggcttgtttggtgtggttgtgatgcaatttggtgataaattgtatatttagttcga |
2484145 |
T |
|
| Q |
318 |
atgcaaaatgaattgatattgatattattgatggggctgtcaaggaagatttggtaaatggtggtttgattaaggttggttattctggttgtactttgaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484146 |
atgcaaaatgaattgatattgatattattgatggggctgtcaaggaagatttggtaaatggtggtttgattaaggttggttattctggttgtactttgaa |
2484245 |
T |
|
| Q |
418 |
ttcggtttggttcatttggtttggtatgttgacttctcactttgattgtctttctctctttggtttcttcctttctgtttgactgcatatctccccttta |
517 |
Q |
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| T |
2484246 |
ttc--------------ggtttggtatgttgacttctcactttgattgtctttctctctttggtttcttcctttctgtttgactgcacatctccccttta |
2484331 |
T |
|
| Q |
518 |
tgattgcacttcacttccctctatttgattcgttctctcttttgatttgtttctttgtttaactagtttctccttcattagtttttctgattgattgtcc |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| |||||||||||||| ||||||||||| |
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| T |
2484332 |
tgattgcacttcacttccctctatttgattcgttctctcttttgatttgtttgtttgtttaattggtttctccctcattagtttttctcattgattgtcc |
2484431 |
T |
|
| Q |
618 |
ctctctgttggtctcttcttcatacttttgaatgattgtatctctccctcttggtttcttcttctgattgattggattgcttctccctgttttgattctt |
717 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484432 |
ctctctgttggtctcttcttcattcttttgattgattgtatctctccctcttgatttcttcttctgattgattggattgcttctccctgttttgattctt |
2484531 |
T |
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| Q |
718 |
ctaattgattgcttctctcccttttta |
744 |
Q |
| |
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||||||||||| ||||| ||||||||| |
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| T |
2484532 |
ctaattgattgtttctcccccttttta |
2484558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 7e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 96 - 306
Target Start/End: Complemental strand, 17927621 - 17927413
Alignment:
| Q |
96 |
ataggcaccgcttgcaacatttggattgagaaagttgtcgttttaaataaaaagagtttgattgagtatacaatttggaatttgctaccacaattgcatt |
195 |
Q |
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|||| |||| ||||||||||| ||||||||||| |||||||| ||| |||| ||||| ||| ||||||||||||||||||||||||||| | ||| || |
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| T |
17927621 |
atagacaccacttgcaacatt-ggattgagaaaattgtcgtt--aaaaaaaaggagttggatcgagtatacaatttggaatttgctaccatagttgtgtt |
17927525 |
T |
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| Q |
196 |
tgaagttattggattaattgagaggcggtttggtaataagaa-aaaatattgcgatccactcagaatggtttgtttggtgtggttgtgatgcaatttggt |
294 |
Q |
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||||||||||||||||||| |||||| | | ||||||||||| |||||| | |||||||||| | |||| ||||||| |||||| ||| ||||| | |
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| T |
17927524 |
tgaagttattggattaattaagaggcagatcggtaataagaaaaaaatagggagatccactcaattttgtttatttggtgcggttgttatgaaattttat |
17927425 |
T |
|
| Q |
295 |
gataaattgtat |
306 |
Q |
| |
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|||||||||||| |
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| T |
17927424 |
gataaattgtat |
17927413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 692 - 742
Target Start/End: Complemental strand, 11828434 - 11828384
Alignment:
| Q |
692 |
gattgcttctccctgttttgattcttctaattgattgcttctctccctttt |
742 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||| |||||||| |
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| T |
11828434 |
gattgcttctcccccttttgattcttttaattgattgcttctttccctttt |
11828384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 709 - 742
Target Start/End: Original strand, 8574429 - 8574462
Alignment:
| Q |
709 |
ttgattcttctaattgattgcttctctccctttt |
742 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
8574429 |
ttgattcttctaattgattgcttctctccctttt |
8574462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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