View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_high_17 (Length: 310)
Name: NF18593_high_17
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 6798841 - 6798556
Alignment:
| Q |
13 |
aatatttacgttttcttatatttaaaataaacttttttgttgtcaaatagaaattcttaaaaataaacttttgggttttaattcgtgtcataattatgca |
112 |
Q |
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| T |
6798841 |
aatatttacgttttcttatatttaaaataaacttttttgttgtcaaatagaaattttaaaaaataa-cttttgggttttaattcgtgtcataattgtgca |
6798743 |
T |
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| Q |
113 |
gcagattatgtatgactatgagccacgaggacttctcnnnnnnnntata--agccacgaggcaag-----nnnnnnnnngtatggatcaccatgagtcac |
205 |
Q |
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| T |
6798742 |
gcagattatgtatgactatgagccacgaggacttctcaaaaaaaatatatgagccacgaggcaagctttttttttttttgtatggatcaccatgagtcac |
6798643 |
T |
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| Q |
206 |
acttatattttatataaatttatttatattcaagtaaattgaaataaacaaaaaatcaactataagtgcatccttgaattaagattg |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6798642 |
acttatattttatataaatttatttatattcaagtaaattgaaataaacaaaaaatcaactataagtgcatccttgaattaagattg |
6798556 |
T |
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