View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_high_2 (Length: 670)
Name: NF18593_high_2
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 514; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 18 - 661
Target Start/End: Complemental strand, 12121879 - 12121237
Alignment:
| Q |
18 |
ctattgatcataatttcttagggggtctttgttctttaattaagtttgttaaggatgttttggctggtttaggtgatgctggaaacaatgtttctaaaga |
117 |
Q |
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| T |
12121879 |
ctattgatcataatttcttagggggtctttgttctttaattaagtttgttaaggatgttttggctggtttaggtgatgctggaaacaatgtttctaaaga |
12121780 |
T |
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| Q |
118 |
tgaatgctgaatgctaagtgagaaagagtgattatcactggtaaagatctcgtgaaagattgcactgatgtagggaacaaatgacaggaaatgtaagtgt |
217 |
Q |
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| T |
12121779 |
tgaatgttgaatgctaagtgagaaagagtgattatcactggtaaagctctcgtgaaagattgcactgatgtagggaacaaatgacaggaaatgtaagtgt |
12121680 |
T |
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| Q |
218 |
aaagttccgcgatgtatattagcggaaga--tttctttaagcagatagatggatagataaatagatttggtttatgttgcagttagctcaaatttgatgc |
315 |
Q |
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| T |
12121679 |
aaaattccgcgatgtatattagcggaagatttttctttaagcagatagatggatagataaatagatatggttaatgttgcaattagctcaaatttgatgc |
12121580 |
T |
|
| Q |
316 |
tgatgagttaaacaaagctttatttttcttgttctttgactaataagacgactactttgtaaggtcttttgagactgtttacagagtttcaaatgatgct |
415 |
Q |
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| T |
12121579 |
tgatgagttaaacaaagctttatttttcatgttctttgactaataagatgactactttgtaaggtctttt-tgactgtttacagagtttcaaaggatgtt |
12121481 |
T |
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| Q |
416 |
ttgatttcaatttggatttactagaaagta----tgcctaaatgtggttattttagtttggatctatacttgttagtagctgttatgtattttacctttg |
511 |
Q |
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| T |
12121480 |
ttaatttcaatttgga-ttactagaaagtatgtttggttaaacgtgg-----ttactttggatctatacttgttagtagctgttatctattttacctttg |
12121387 |
T |
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| Q |
512 |
atgtgtgatgatttagtagtttttgttgatgtgcacaattttcatttcctcattatcacaagagttactgcaactattctgttgcaagtaaagttttgat |
611 |
Q |
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| T |
12121386 |
atgtgtgatgatttagtagtttttgttgatgtgcacaattttcatttcctcattatcacaagagttactgcaactattctgttgcaagtaaagttttgat |
12121287 |
T |
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| Q |
612 |
agatatccttacctttagtctgcttcatctatatgtgttaccattcattt |
661 |
Q |
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| T |
12121286 |
agatatccttacctttagtctgcttcatctttatgtgttaccattcattt |
12121237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 14691398 - 14691331
Alignment:
| Q |
18 |
ctattgatcataatttcttagggggtctttgttctttaattaagtttgttaaggatgttttggctggt |
85 |
Q |
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| T |
14691398 |
ctattgatcataatttcttagggggtctctgttctttgattaagtttgttaaggatgttttgactggt |
14691331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 267 - 424
Target Start/End: Original strand, 14670021 - 14670180
Alignment:
| Q |
267 |
gatagataaatagatttggtttatgttgcagttagctcaaatttgatgctgatgagttaaacaaagctttatttttcttgttctttgactaataagacga |
366 |
Q |
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| T |
14670021 |
gatagatagatatattcggtatatgttgcaatcagctcaagtttgattttgttgacttaaacaaagctttatttttcatgttatttgacttataagttga |
14670120 |
T |
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| Q |
367 |
ct-actttgtaaggtcttttgagactg-tttacagagtttcaaatgatgctttgatttca |
424 |
Q |
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| T |
14670121 |
ttgattttataaggtctttcgacactgttttgcattgtttcaaatgatgctttaatttca |
14670180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 433
Target Start/End: Complemental strand, 14643252 - 14643107
Alignment:
| Q |
291 |
gttgcagttagctcaaatttgatgctgatgagttaaacaaagctttatttttcttgttctttgactaataagacgact-actttgtaaggtcttttgaga |
389 |
Q |
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| T |
14643252 |
gttgcaatcagctcaagtttgattttgttgacttgaacgaagctttatttttcatgttatttgacttataagttgactgattttgtaaggtctttcgaca |
14643153 |
T |
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| Q |
390 |
ctg-tttacagagtttcaaatgatgctttgatttcaa-tttggatt |
433 |
Q |
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| T |
14643152 |
ctgttttgcattgtttcaaatgatgctttaatttcaagtttggatt |
14643107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 616
Target Start/End: Complemental strand, 14690993 - 14690895
Alignment:
| Q |
518 |
gatgatttagtagtttttgttgatgtgcacaattttcatttcctcattatcacaagagttactgcaactattctgttgcaagtaaagttttgatagata |
616 |
Q |
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| T |
14690993 |
gatgatatggtagctttggttgaaatgcacaattttcattttctcatgatcataagagttactgcaactgttccatttcaagtcaagttcttatagata |
14690895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 428
Target Start/End: Complemental strand, 14691146 - 14691093
Alignment:
| Q |
375 |
taaggtcttttgagactgtttacagagtttcaaatgatgctttgatttcaattt |
428 |
Q |
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| T |
14691146 |
taaggtcttttgaaaagttttacagagtttcagatgatgctttaatttcaattt |
14691093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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